| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ENCODE Project Consortium Nature 447 (7146), 799, 2007 | 5938 | 2007 |
| Epigenetic memory in induced pluripotent stem cells K Kim, B Wen, K Ng, R Zhao, P Cahan, J Kim, MJ Aryee, H Ji, LIR Ehrlich, ... Nature 467 (7313), 285-290, 2010 | 2616 | 2010 |
| An extended transcriptional network for pluripotency of embryonic stem cells J Kim, J Chu, X Shen, J Wang, SH Orkin Cell 132 (6), 1049-1061, 2008 | 1561 | 2008 |
| FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin PG Giresi, J Kim, RM McDaniell, VR Iyer, JD Lieb Genome research 17 (6), 877-885, 2007 | 1133 | 2007 |
| EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency X Shen, Y Liu, YJ Hsu, Y Fujiwara, J Kim, X Mao, GC Yuan, SH Orkin Molecular cell 32 (4), 491-502, 2008 | 1079 | 2008 |
| A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs J Kim, AJ Woo, J Chu, JW Snow, Y Fujiwara, CG Kim, AB Cantor, ... Cell 143 (2), 313-324, 2010 | 749 | 2010 |
| A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal G Hu, J Kim, Q Xu, Y Leng, SH Orkin, SJ Elledge Genes & development 23 (7), 837-848, 2009 | 464 | 2009 |
| Epigenetic regulation of hematopoietic differentiation by Gfi-1 and Gfi-1b is mediated by the cofactors CoREST and LSD1 S Saleque, J Kim, HM Rooke, SH Orkin Molecular cell 27 (4), 562-572, 2007 | 447 | 2007 |
| DNA methyltransferase 1 is essential for and uniquely regulates hematopoietic stem and progenitor cells JJ Trowbridge, JW Snow, J Kim, SH Orkin Cell stem cell 5 (4), 442-449, 2009 | 416 | 2009 |
| Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo J Kim, J Lee, VR Iyer PLoS One 3 (3), e1798, 2008 | 260 | 2008 |
| TIF1γ controls erythroid cell fate by regulating transcription elongation X Bai, J Kim, Z Yang, MJ Jurynec, TE Akie, J Lee, J LeBlanc, A Sessa, ... Cell 142 (1), 133-143, 2010 | 227 | 2010 |
| ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients E Baena, Z Shao, DE Linn, K Glass, MJ Hamblen, Y Fujiwara, J Kim, ... Genes & development 27 (6), 683-698, 2013 | 200 | 2013 |
| Use of in vivo biotinylation to study protein–protein and protein–DNA interactions in mouse embryonic stem cells J Kim, AB Cantor, SH Orkin, J Wang Nature protocols 4 (4), 506-517, 2009 | 165 | 2009 |
| Serine/Threonine kinase MLK4 determines Mesenchymal Identity in Glioma Stem Cells in an NF-κB-dependent manner SH Kim, R Ezhilarasan, E Phillips, D Gallego-Perez, A Sparks, D Taylor, ... Cancer Cell 29 (2), 201-13, 2016 | 158 | 2016 |
| Embryonic stem cell-specific signatures in cancer: insights into genomic regulatory networks and implications for medicine J Kim, SH Orkin Genome medicine 3 (11), 1-8, 2011 | 151 | 2011 |
| Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment J Kim, AA Bhinge, XC Morgan, VR Iyer Nature Methods 2 (1), 47-53, 2005 | 145 | 2005 |
| Distinct and combinatorial functions of Jmjd2b/Kdm4b and Jmjd2c/Kdm4c in mouse embryonic stem cell identity PP Das, Z Shao, S Beyaz, E Apostolou, L Pinello, A De Los Angeles, ... Molecular cell 53 (1), 32-48, 2014 | 126 | 2014 |
| The transcriptional network controlling pluripotency in ES cells SH Orkin, J Wang, J Kim, J Chu, S Rao, TW Theunissen, X Shen, ... Cold Spring Harbor symposia on quantitative biology 73, 195-202, 2008 | 116 | 2008 |
| Global Transcriptional Profiling Reveals Distinct Functions of Thymic Stromal Subsets and Age-Related Changes During Thymic Involution S Ki, D Park, HJ Selden, J Seita, H Chung, J Kim, VR Iyer, LIR Ehrlich Cell Reports 9 (1), 402-415, 2014 | 97 | 2014 |
| Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE) AA Bhinge, J Kim, GM Euskirchen, M Snyder, VR Iyer Genome research 17 (6), 910-916, 2007 | 97 | 2007 |
Stuart OrkinVerified email at dfci.harvard.edu
