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Ninad Oak
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Pathogenic germline variants in 10,389 adult cancers
K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ...
Cell 173 (2), 355-370. e14, 2018
7002018
Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines
R Ghosh, N Oak, SE Plon
Genome biology 18, 1-12, 2017
2222017
Comprehensive analysis of genetic ancestry and its molecular correlates in cancer
J Carrot-Zhang, N Chambwe, JS Damrauer, TA Knijnenburg, ...
Cancer Cell 37 (5), 639-654. e6, 2020
1742020
Molecular basis of ETV6-mediated predisposition to childhood acute lymphoblastic leukemia
R Nishii, R Baskin-Doerfler, W Yang, N Oak, X Zhao, W Yang, ...
Blood, The Journal of the American Society of Hematology 137 (3), 364-373, 2021
472021
Ancestry-specific predisposing germline variants in cancer
N Oak, AD Cherniack, RJ Mashl, FR Hirsch, L Ding, R Beroukhim, ...
Genome medicine 12, 1-15, 2020
382020
Recent advances in Wilms’ tumor predisposition
JL Maciaszek, N Oak, KE Nichols
Human molecular genetics 29 (R2), R138-R149, 2020
312020
Enrichment of heterozygous germline RECQL4 loss-of-function variants in pediatric osteosarcoma
JL Maciaszek, N Oak, W Chen, KV Hamilton, RB McGee, R Nuccio, ...
Molecular Case Studies 5 (5), a004218, 2019
202019
Framework for microRNA variant annotation and prioritization using human population and disease datasets
N Oak, R Ghosh, K Huang, DA Wheeler, L Ding, SE Plon
Human mutation 40 (1), 73-89, 2019
202019
Cancer Genome Atlas Research
KL Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ...
Lichtarge O, Boutros PC, Raphael B, Lazar AJ, Zhang W, Wendl MC, Govindan R …, 2018
122018
Transient inhibition of the JAK/STAT pathway prevents B-ALL development in genetically predisposed mice
A Casado-García, M Isidro-Hernández, N Oak, A Mayado, C Mann-Ran, ...
Cancer Research 82 (6), 1098-1109, 2022
112022
Integrated genomics approach to identify biologically relevant alterations in fewer samples
P Chandrani, P Upadhyay, P Iyer, M Tanna, M Shetty, GV Raghuram, ...
BMC genomics 16, 1-13, 2015
112015
Discovery of novel predisposing coding and noncoding variants in familial Hodgkin lymphoma
JE Flerlage, JR Myers, JL Maciaszek, N Oak, SR Rashkin, Y Hui, ...
Blood 141 (11), 1293-1307, 2023
102023
TCGA Analysis Network
N Oak, AD Cherniack, RJ Mashl, FR Hirsch, L Ding, R Beroukhim
Hirsch, FR, 2020
92020
Development of BRAFV600E-positive acute myeloid leukemia in a patient on long-term dabrafenib for multisystem LCH
M Salek, N Oak, M Hines, JL Maciaszek, R Tatevossian, A Sharma, ...
Blood Advances 6 (8), 2681-2684, 2022
82022
Pathogenic variants in adult-onset cancer predisposition genes in pediatric cancer: prevalence and impact on tumor molecular features and clinical management
RB McGee, N Oak, L Harrison, K Xu, R Nuccio, AK Blake, R Mostafavi, ...
Clinical Cancer Research 29 (7), 1243-1251, 2023
32023
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children’s Oncology Group AREN18B5-Q
AJ Murphy, C Cheng, J Williams, TI Shaw, EM Pinto, K Dieseldorff-Jones, ...
Nature Communications 14 (1), 8006, 2023
22023
Immune stress suppresses innate immune signaling in preleukemic precursor B-cells to provoke leukemia in predisposed mice
M Isidro-Hernández, A Casado-García, N Oak, S Alemán-Arteaga, ...
Nature Communications 14 (1), 5159, 2023
22023
Analytical protocol to identify local ancestry-associated molecular features in cancer
J Carrot-Zhang, S Han, W Zhou, JS Damrauer, A Kemal, AC Berger, ...
STAR protocols 2 (4), 100766, 2021
22021
Identification of ligand binding pockets on nuclear receptors by machine learning methods
N Oak, VK Jayaraman
Protein and Peptide Letters 21 (8), 808-814, 2014
22014
ETV6 represses inflammatory response genes and regulates HSPC function during stress hematopoiesis in mice
M Bloom, N Oak, R Baskin-Doerfler, R Feng, I Iacobucci, P Baviskar, ...
Blood Advances 7 (18), 5608-5623, 2023
12023
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Articles 1–20