| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335, 2010 | 17383 | 2010 |
| Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... nature 486 (7402), 207, 2012 | 4784 | 2012 |
| Isolation by distance, web service JL Jensen, AJ Bohonak, ST Kelley BMC genetics 6 (1), 13, 2005 | 1578 | 2005 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012 | 1278 | 2012 |
| Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities CA Lozupone, M Hamady, ST Kelley, R Knight Appl. Environ. Microbiol. 73 (5), 1576-1585, 2007 | 1070 | 2007 |
| The marine viromes of four oceanic regions FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, ... PLoS biology 4 (11), e368, 2006 | 950 | 2006 |
| Metabolic reconstruction for metagenomic data and its application to the human microbiome S Abubucker, N Segata, J Goll, AM Schubert, J Izard, BL Cantarel, ... PLoS computational biology 8 (6), e1002358, 2012 | 721 | 2012 |
| Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761, 2011 | 454 | 2011 |
| Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415, 2011 | 387 | 2011 |
| Diversity and population structure of a near–shore marine–sediment viral community M Breitbart, B Felts, S Kelley, JM Mahaffy, J Nulton, P Salamon, F Rohwer Proceedings of the Royal Society of London. Series B: Biological Sciences …, 2004 | 322 | 2004 |
| IS SPECIALIZATION A DEAD END? THE PHYLOGENY OF HOST USE IN DENDROCTONUS BARK BEETLES (SCOLYTIDAE) ST Kelley, BD Farrell Evolution 52 (6), 1731-1743, 1998 | 309 | 1998 |
| Phylogenetic classification of short environmental DNA fragments L Krause, NN Diaz, A Goesmann, S Kelley, TW Nattkemper, F Rohwer, ... Nucleic acids research 36 (7), 2230-2239, 2008 | 299 | 2008 |
| Viral diversity and dynamics in an infant gut M Breitbart, M Haynes, S Kelley, F Angly, RA Edwards, B Felts, ... Research in microbiology 159 (5), 367-373, 2008 | 265 | 2008 |
| The genetic core of the universal ancestor JK Harris, ST Kelley, GB Spiegelman, NR Pace Genome research 13 (3), 407-412, 2003 | 246 | 2003 |
| Biodiversity and biogeography of phages in modern stromatolites and thrombolites C Desnues, B Rodriguez-Brito, S Rayhawk, S Kelley, T Tran, M Haynes, ... Nature 452 (7185), 340, 2008 | 237 | 2008 |
| Murine noroviruses comprising a single genogroup exhibit biological diversity despite limited sequence divergence LB Thackray, CE Wobus, KA Chachu, B Liu, ER Alegre, KS Henderson, ... Journal of virology 81 (19), 10460-10473, 2007 | 236 | 2007 |
| Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: an example from squamate reptiles TM Townsend, RE Alegre, ST Kelley, JJ Wiens, TW Reeder Molecular phylogenetics and evolution 47 (1), 129-142, 2008 | 222 | 2008 |
| Molecular identification of potential pathogens in water and air of a hospital therapy pool LT Angenent, ST Kelley, AS Amand, NR Pace, MT Hernandez Proceedings of the National Academy of Sciences 102 (13), 4860-4865, 2005 | 217 | 2005 |
| New perspective on uncultured bacterial phylogenetic division OP11 JK Harris, ST Kelley, NR Pace Appl. Environ. Microbiol. 70 (2), 845-849, 2004 | 210 | 2004 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 166 | 2018 |
