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Shikai Jin
Shikai Jin
Other namesShi-Kai Jin
Center for Theoretical Biological Physics, Rice University
Verified email at rice.edu - Homepage
Title
Cited by
Cited by
Year
Factors and pathways involved in capacitation: how are they regulated?
SK Jin, WX Yang
Oncotarget 8 (2), 3600-3627, 2017
1272017
OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations
W Lu, C Bueno, NP Schafer, J Moller, S Jin, X Chen, M Chen, X Gu, ...
PLoS Computational Biology 17 (2), e1008308, 2021
312021
Identification of an oleanane-type triterpene hedragonic acid as a novel farnesoid X receptor ligand with liver protective effects and anti-inflammatory activity
Y Lu, W Zheng, S Lin, F Guo, Y Zhu, Y Wei, X Liu, S Jin, L Jin, Y Li
Molecular Pharmacology 93 (2), 63-72, 2018
312018
Revealing a natural marine product as a novel agonist for retinoic acid receptors with a unique binding mode and inhibitory effects on cancer cells
S Wang, Z Wang, S Lin, W Zheng, R Wang, S Jin, J Chen, L Jin, Y Li
Biochemical Journal 446 (1), 79-87, 2012
242012
AWSEM-Suite: A protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes
S Jin, VG Contessoto, M Chen, NP Schafer, W Lu, X Chen, C Bueno, ...
Nucleic Acids Research 48 (W1), W25-W30, 2020
232020
Unleashing the potential of noncanonical amino acid biosynthesis to create cells with precision tyrosine sulfation
Y Chen, S Jin, M Zhang, Y Hu, KL Wu, A Chung, S Wang, Z Tian, Y Wang, ...
Nature Communications 13 (1), 5434, 2022
202022
Protein structure prediction in CASP13 using AWSEM-Suite
S Jin, M Chen, X Chen, C Bueno, W Lu, NP Schafer, X Lin, JN Onuchic, ...
Journal of Chemical Theory and Computation 16 (6), 3977-3988, 2020
172020
Forging tools for refining predicted protein structures
X Lin, NP Schafer, W Lu, S Jin, X Chen, M Chen, JN Onuchic, ...
Proceedings of the National Academy of Sciences 116 (19), 9400-9409, 2019
162019
A novel class of natural FXR modulators with a unique mode of selective co‐regulator assembly
W Zheng, Y Lu, S Lin, R Wang, L Qiu, Y Zhu, B Yao, F Guo, S Jin, L Jin, ...
ChemBioChem 18 (8), 721-725, 2017
142017
Molecular-replacement phasing using predicted protein structures from AWSEM-Suite
S Jin, MD Miller, M Chen, NP Schafer, X Lin, X Chen, GN Phillips, ...
IUCrJ 7 (6), 1168-1178, 2020
122020
Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNA
S Jin, C Bueno, W Lu, Q Wang, M Chen, X Chen, PG Wolynes, Y Gao
Proceedings of the National Academy of Sciences 119 (32), e2202239119, 2022
82022
Protein structure refinement guided by atomic packing frustration analysis
M Chen, X Chen, S Jin, W Lu, X Lin, PG Wolynes
The Journal of Physical Chemistry B 124 (48), 10889-10898, 2020
62020
The marionette mechanism of domain-domain communication in the antagonist, agonist, and coactivator responses of the estrogen receptor
X Chen, S Jin, M Chen, C Bueno, PG Wolynes
Proceedings of the National Academy of Sciences 120 (6), e2216906120, 2023
52023
Exploring the folding energy landscapes of heme proteins using a hybrid AWSEM-heme model
X Chen, W Lu, MY Tsai, S Jin, PG Wolynes
Journal of Biological Physics 48 (1), 37-53, 2022
52022
Structural insights into the nuclear import of the histone acetyltransferase males‐absent‐on‐the‐first by importin α1
W Zheng, R Wang, X Liu, S Tian, B Yao, A Chen, S Jin, Y Li
Traffic 19 (1), 19-28, 2018
52018
A deep learning solution for crystallographic structure determination
T Pan, S Jin, MD Miller, A Kyrillidis, GN Phillips
IUCrJ 10 (4), 487-496, 2023
42023
Structural basis of DNA polymerase θ mediated DNA end joining
C Li, H Zhu, S Jin, LM Maksoud, N Jain, J Sun, Y Gao
Nucleic Acids Research 51 (1), 463-474, 2023
22023
CrysFormer: Protein crystallography prediction via 3D Patterson maps and partial structure attention
C Dun, T Pan, S Jin, R Stevens, MD Miller, GN Phillips Jr, A Kyrillidis
Machine Learning for Structural Biology Workshop, NeurIPS 2023, 2023
1*2023
Modeling protein structural ensembles using AWSEM-Suite
S Jin
Rice University, 2023
2023
Exploring the mechanism of the bacteriophage T7 single-stranded DNA binding protein gp2.5
S Jin, Y Gao, PG Wolynes
Biophysical Journal 122 (3), 186a, 2023
2023
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Articles 1–20