| Magnitude and dynamics of the T-cell response to SARS-CoV-2 infection at both individual and population levels TM Snyder, RM Gittelman, M Klinger, DH May, EJ Osborne, R Taniguchi, ... MedRxiv, 2020 | 186 | 2020 |
| Identifying structural variants using linked-read sequencing data R Elyanow, HT Wu, BJ Raphael Bioinformatics 34 (2), 353-360, 2018 | 79 | 2018 |
| netNMF-sc: A Network Regularization Algorithm for Dimensionality Reduction and Imputation of Single-Cell Expression Data. R Elyanow, B Dumitrascu, BE Engelhardt, BJ Raphael RECOMB, 297-298, 2019 | 76* | 2019 |
| T cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity R Elyanow, TM Snyder, SC Dalai, RM Gittelman, J Boonyaratanakornkit, ... JCI insight 7 (10), 2022 | 38* | 2022 |
| The T-cell response to SARS-CoV-2 vaccination in inflammatory bowel disease is augmented with anti-TNF therapy D Li, A Xu, E Mengesha, R Elyanow, RM Gittelman, H Chapman, ... Inflammatory Bowel Diseases 28 (7), 1130-1133, 2022 | 37* | 2022 |
| STARCH: copy number and clone inference from spatial transcriptomics data R Elyanow, R Zeira, M Land, BJ Raphael Physical biology 18 (3), 035001, 2021 | 37 | 2021 |
| Immunosequencing and epitope mapping reveal substantial preservation of the T cell immune response to Omicron generated by SARS-CoV-2 vaccines DH May, BER Rubin, SC Dalai, K Patel, S Shafiani, R Elyanow, ... MedRxiv, 2021.12. 20.21267877, 2021 | 22 | 2021 |
| Symptom burden and immune dynamics 6 to 18 months following mild SARS-CoV-2 infection-a case-control study EB Fjelltveit, B Blomberg, K Kuwelker, F Zhou, TB Onyango, KA Brokstad, ... Oxford University Press, 2022 | 20* | 2022 |
| Diagnosis and tracking of SARS-CoV-2 infection by T-cell receptor sequencing RM Gittelman, E Lavezzo, TM Snyder, HJ Zahid, R Elyanow, S Dalai, ... MedRxiv, 2020.11. 09.20228023, 2020 | 20 | 2020 |
| Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection RM Gittelman, E Lavezzo, TM Snyder, HJ Zahid, CL Carty, R Elyanow, ... JCI insight 7 (10), 2022 | 16 | 2022 |
| Ecological load and balancing selection in circumboreal barnacles JCB Nunez, S Rong, A Damian-Serrano, JT Burley, RG Elyanow, ... Molecular Biology and Evolution 38 (2), 676-685, 2021 | 14 | 2021 |
| NetMix: a network-structured mixture model for reduced-bias estimation of altered subnetworks MA Reyna, U Chitra, R Elyanow, BJ Raphael Journal of Computational Biology 28 (5), 469-484, 2021 | 12 | 2021 |
| Diagnosis and Tracking of Past SARS-CoV-2 Infection in a Large Study of Vo', Italy Through T-Cell Receptor Sequencing (preprint) RM Gittelman, E Lavezzo, TM Snyder, HJ Zahid, R Elyanow, S Dalai, ... | 12 | 2020 |
| Population Genomics and Biogeography of the Northern Acorn Barnacle (Semibalanus balanoides) Using Pooled Sequencing Approaches JCB Nunez, RG Elyanow, DA Ferranti, DM Rand Population genomics: Marine organisms, 139-168, 2020 | 12 | 2020 |
| From tides to nucleotides: Genomic signatures of adaptation to environmental heterogeneity in barnacles JCB Nunez, S Rong, DA Ferranti, A Damian‐Serrano, KB Neil, H Glenner, ... Molecular Ecology 30 (23), 6417-6433, 2021 | 10 | 2021 |
| Durable immune responses after BNT162b2 vaccination in home-dwelling old adults L Hansen, KA Brokstad, A Bansal, F Zhou, G Bredholt, TB Onyango, ... Vaccine: X 13, 100262, 2023 | 9 | 2023 |
| Differences in SARS-CoV-2 vaccine response dynamics between class-I-and class-II-specific T-cell receptors in inflammatory bowel disease AM Xu, D Li, JE Ebinger, E Mengesha, R Elyanow, RM Gittelman, ... Frontiers in Immunology 13, 880190, 2022 | 7 | 2022 |
| Repeated mRNA vaccination sequentially boosts SARS-CoV-2-specific CD8+ T cells in persons with previous COVID-19 ES Ford, K Mayer-Blackwell, L Jing, KJ Laing, AM Sholukh, R St. Germain, ... Nature Immunology 25 (1), 166-177, 2024 | 4* | 2024 |
| AIRIVA: a deep generative model of adaptive immune repertoires MF Pradier, N Prasad, P Chapfuwa, S Ghalebikesabi, M Ilse, ... Machine Learning for Healthcare Conference, 588-611, 2023 | 4 | 2023 |
| Omicron variant partially escapes the T-cell response induced by SARS-CoV-2 vaccines DH May, B Rubin, SC Dalai, K Patel, S Shafiani, R Elyanow, MT Noakes, ... | 4 | 2022 |
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu
