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David van IJzendoorn
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Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas
DGP van IJzendoorn, K Szuhai, IH Briaire-de Bruijn, M Kostine, ML Kuijjer, ...
PLoS computational biology 15 (2), e1006826, 2019
932019
Fusion events lead to truncation of FOS in epithelioid hemangioma of bone
DGP van IJzendoorn, D de Jong, C Romagosa, P Picci, MS Benassi, ...
Genes, Chromosomes and Cancer 54 (9), 565-574, 2015
782015
Telatinib is an effective targeted therapy for pseudomyogenic hemangioendothelioma
DGP Van IJzendoorn, S Sleijfer, H Gelderblom, FALM Eskens, ...
Clinical Cancer Research 24 (11), 2678-2687, 2018
442018
Functional analyses of a human vascular tumor FOS variant identify a novel degradation mechanism and a link to tumorigenesis
DGP van IJzendoorn, Z Forghany, F Liebelt, AC Vertegaal, ...
Journal of Biological Chemistry 292 (52), 21282-21290, 2017
412017
Molecular pathology of bone tumors
SW Lam, DGP van IJzendoorn, AM Cleton-Jansen, K Szuhai, ...
The Journal of Molecular Diagnostics 21 (2), 171-182, 2019
252019
Vascular tumors of bone: the evolvement of a classification based on molecular developments
DGP van IJzendoorn, JVMG Bovée
Surgical Pathology Clinics 10 (3), 621-635, 2017
252017
Analysis of 567,758 randomized controlled trials published over 30 years reveals trends in phrases used to discuss results that do not reach statistical significance
WM Otte, CH Vinkers, PC Habets, DGP Van Ijzendoorn, JK Tijdink
PLoS Biology 20 (2), e3001562, 2022
222022
PyPanda: a Python package for gene regulatory network reconstruction
DGP van IJzendoorn, K Glass, J Quackenbush, ML Kuijjer
Bioinformatics 32 (21), 3363-3365, 2016
142016
Vascular tumor recapitulated in endothelial cells from hiPSCs engineered to express the SERPINE1-FOSB translocation
DGP van IJzendoorn, DCF Salvatori, X Cao, F van den Hil, ...
Cell Reports Medicine 1 (9), 2020
112020
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks
M Ben Guebila, T Wang, CM Lopes-Ramos, V Fanfani, D Weighill, ...
Genome Biology 24 (1), 45, 2023
52023
Interactions in CSF1-driven tenosynovial giant cell tumors
DGP van IJzendoorn, M Matusiak, GW Charville, G Spierenburg, S Varma, ...
Clinical Cancer Research 28 (22), 4934-4946, 2022
42022
Almost significant: trends and P values in the use of phrases describing marginally significant results in 567,758 randomized controlled trials published between 1990 and 2020
WM Otte, CH Vinkers, P Habets, DGP van IJzendoorn, JK Tijdink
medRxiv, 2021.03. 01.21252701, 2021
32021
Psammomatoid ossifying fibroma is defined by SATB2 rearrangement
AHG Cleven, K Szuhai, DGP van IJzendoorn, E Groen, H Baelde, ...
Modern Pathology 36 (1), 100013, 2023
22023
Development and validation of a machine-learning algorithm to predict the relevance of scientific articles within the field of teratology
PC Habets, DGP van IJzendoorn, CH Vinkers, L Härmark, LC de Vries, ...
Reproductive Toxicology 113, 150-154, 2022
22022
Juvenile psammomatoid ossifying fibroma is defined by SATB2 rearrangement
A Cleven, K Szuhai, D van IJzendoorn, E Groen, H Baelde, P Schreuder, ...
LABORATORY INVESTIGATION 102 (SUPPL 1), 866-866, 2022
22022
Identification and validation of sarcoma cellular ecosystems associated with prognosis and predictive of immunotherapy response
A Subramanian, N Nemat-Gorgani, TJ Ellis-Caleo, DGP van IJzendoorn, ...
Cancer Research 83 (7_Supplement), 5960-5960, 2023
12023
Clinical study type classification, validation, and PubMed filter comparison with natural language processing and active learning
DGP van IJzendoorn, PC Habets, CH Vinkers, WM Otte
medRxiv, 2022.11. 01.22281685, 2022
12022
The network zoo: a multilingual package for the inference and analysis of biological networks
MB Guebila, T Wang, CM Lopes-Ramos, V Fanfani, D Weighill, ...
bioRxiv, 2022.05. 30.494077, 2022
12022
Sarcoma microenvironment cell states and ecosystems are associated with prognosis and predict response to immunotherapy
A Subramanian, N Nemat-Gorgani, TJ Ellis-Caleo, DGP van IJzendoorn, ...
Nature Cancer, 1-17, 2024
2024
Single Cell Expression Analysis of Ductal Carcinoma in Situ Identifies Alterations in Epithelial Integrity
X Qin, SH Strand, MR Lee, DGP van Ijzendoorn, CF Zhu, S Vennam, ...
bioRxiv, 2023.10. 10.561724, 2023
2023
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