| ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology J Waese, J Fan, A Pasha, H Yu, G Fucile, R Shi, M Cumming, LA Kelley, ... The Plant Cell 29 (8), 1806-1821, 2017 | 346 | 2017 |
| Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig Y Rubanova, R Shi, CF Harrigan, R Li, J Wintersinger, N Sahin, ... Nature Communications 11 (1), 1-12, 2020 | 53* | 2020 |
| Segmenting Hybrid Trajectories using Latent ODEs R Shi, Q Morris Proceedings of the 38th International Conference on Machine Learning 139 …, 2021 | 7 | 2021 |
| PAN-cODE: COVID-19 forecasting using conditional latent ODEs R Shi, H Zhang, Q Morris Journal of the American Medical Informatics Association 29 (12), 2089-2095, 2022 | 2 | 2022 |
| Structured Neural Networks for Density Estimation and Causal Inference A Chen, RI Shi, X Gao, R Baptista, RG Krishnan Advances in Neural Information Processing Systems 36, 2024 | | 2024 |
| Splicing Up Your Predictions with RNA Contrastive Learning P Fradkin, R Shi, B Wang, B Frey, LJ Lee arXiv preprint arXiv:2310.08738, 2023 | | 2023 |
