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Alejandro Ochoa
Alejandro Ochoa
Assistant Professor, StatGen, Biostatistics & Bioinformatics, Duke Univeristy
Verified email at duke.edu - Homepage
Title
Cited by
Cited by
Year
Evolution and diversity in human herpes simplex virus genomes
ML Szpara, D Gatherer, A Ochoa, B Greenbaum, A Dolan, RJ Bowden, ...
Journal of virology 88 (2), 1209-1227, 2014
2202014
Proteome-wide analysis reveals widespread lysine acetylation of major protein complexes in the malaria parasite
SA Cobbold, JM Santos, A Ochoa, DH Perlman, M Llinás
Scientific reports 6 (1), 19722, 2016
832016
Estimating FST and kinship for arbitrary population structures
A Ochoa, JD Storey
PLoS genetics 17 (1), e1009241, 2021
64*2021
Using context to improve protein domain identification
A Ochoa, M Llinás, M Singh
BMC bioinformatics 12, 1-14, 2011
382011
Computing van der Waals energies in the context of the rotamer approximation
G Grigoryan, A Ochoa, AE Keating
Proteins: Structure, Function, and Bioinformatics 68 (4), 863-878, 2007
342007
Beyond the E-Value: Stratified Statistics for Protein Domain Prediction
A Ochoa, JD Storey, M Llinás, M Singh
PLoS computational biology 11 (11), e1004509, 2015
262015
FST and kinship for arbitrary population structures I: Generalized definitions
A Ochoa, JD Storey
bioRxiv, 083915, 2016
162016
Correcting signal biases and detecting regulatory elements in STARR-seq data
YS Kim, GD Johnson, J Seo, A Barrera, TN Cowart, WH Majoros, A Ochoa, ...
Genome research 31 (5), 877-889, 2021
152021
Steroid-sensitive nephrotic syndrome candidate gene CLVS1 regulates podocyte oxidative stress and endocytosis
BM Lane, M Chryst-Stangl, G Wu, M Shalaby, S El Desoky, CC Middleton, ...
JCI insight 7 (2), 2022
132022
Limitations of principal components in quantitative genetic association models for human studies
Y Yao, A Ochoa
Elife 12, e79238, 2023
102023
New kinship and FST estimates reveal higher levels of differentiation in the global human population
A Ochoa, JD Storey
bioRxiv, 653279, 2019
102019
Domain prediction with probabilistic directional context
A Ochoa, M Singh
Bioinformatics 33 (16), 2471-2478, 2017
62017
HLA loci and recurrence of focal segmental glomerulosclerosis in pediatric kidney transplantation
BI Shaw, A Ochoa, C Chan, C Nobuhara, R Gbadegesin, AM Jackson, ...
Transplantation direct 7 (10), e748, 2021
32021
Genetic association models are robust to common population kinship estimation biases
Z Hou, A Ochoa
Genetics, iyad030, 2023
22023
Testing the effectiveness of principal components in adjusting for relatedness in genetic association studies
Y Yao, A Ochoa
bioRxiv, 858399, 2019
22019
Genetic risk variants for childhood nephrotic syndrome and corticosteroid response
RK Cason, E Chambers, T Tu, M Chryst-Stangl, K Huggins, BM Lane, ...
Frontiers in Pediatrics 11, 2023
2023
Hla Antigens and Recurrence of Focal Segmental Glomerulosclerosis in Pediatric Kidney Transplantation
BI Shaw, A Ochoa, C Chan, RA Gbadegesin, AM Jackson, ET Chambers
AMERICAN JOURNAL OF TRANSPLANTATION 21, 321-322, 2021
2021
T73GENOME-WIDE ASSOCIATION STUDY FOR PSYCHIATRIC RESPONSE TO ANTI-PSYCHOTIC TREATMENT
S Gottipati, A Ochoa, B Ramaswamy, M Belete, J Storey
European Neuropsychopharmacology 29, S254, 2019
2019
Simulate Admixed Populations with bnpsd
A Ochoa, JD Storey
2019
Estimate Kinship and FST under Arbitrary Population Structure with popkin
A Ochoa, JD Storey
dim (X) 1 (5000), 159, 2018
2018
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