| Bacteriophage classification for assembled contigs using graph convolutional network J Shang, J Jiang, Y Sun Bioinformatics 37 (Supplement_1), i25-i33, 2021 | 62 | 2021 |
| PhaTYP: predicting the lifestyle for bacteriophages using BERT J Shang, X Tang, Y Sun Briefings in Bioinformatics 24 (1), bbac487, 2023 | 41 | 2023 |
| CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning J Shang, Y Sun Methods 189, 95-103, 2021 | 41 | 2021 |
| Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework Y Zhu, J Shang, C Peng, Y Sun Frontiers in microbiology 13, 1032186, 2022 | 38 | 2022 |
| Fast detection method of quick response code based on run‐length coding S Li, J Shang, Z Duan, J Huang IET Image Processing 12 (4), 546-551, 2018 | 30 | 2018 |
| Virus classification for viral genomic fragments using PhaGCN2 JZ Jiang, WG Yuan, J Shang, YH Shi, LL Yang, M Liu, P Zhu, T Jin, Y Sun, ... Briefings in bioinformatics 24 (1), bbac505, 2023 | 29 | 2023 |
| CHERRY: a Computational metHod for accuratE pRediction of virus–pRokarYotic interactions using a graph encoder–decoder model J Shang, Y Sun Briefings in Bioinformatics 23 (5), bbac182, 2022 | 27 | 2022 |
| Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning J Shang, Y Sun BMC biology 19, 1-15, 2021 | 27 | 2021 |
| Accurate identification of bacteriophages from metagenomic data using Transformer J Shang, X Tang, R Guo, Y Sun Briefings in Bioinformatics 23 (4), bbac258, 2022 | 23 | 2022 |
| PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data J Shang, C Peng, H Liao, X Tang, Y Sun Bioinformatics Advances 3 (1), vbad101, 2023 | 10 | 2023 |
| PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer X Tang, J Shang, Y Ji, Y Sun Nucleic Acids Research 51 (15), e83-e83, 2023 | 8 | 2023 |
| Improving protein domain classification for third-generation sequencing reads using deep learning N Du, J Shang, Y Sun BMC genomics 22, 1-13, 2021 | 8 | 2021 |
| HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer Y Ji, J Shang, X Tang, Y Sun Bioinformatics 39 (5), btad283, 2023 | 5 | 2023 |
| A robust fuzzy local Information c-means clustering algorithm with noise detection J Shang, S Li, J Huang Ninth international conference on graphic and image processing (ICGIP 2017 …, 2018 | 5 | 2018 |
| Haplodmf: viral haplotype reconstruction from long reads via deep matrix factorization D Cai, J Shang, Y Sun Bioinformatics 38 (24), 5360-5367, 2022 | 3 | 2022 |
| RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data X Tang, J Shang, Y Sun Briefings in Bioinformatics 23 (2), bbac011, 2022 | 3 | 2022 |
| Identifying ARG-carrying bacteriophages in a lake replenished by reclaimed water using deep learning techniques D Wang, J Shang, H Lin, J Liang, C Wang, Y Sun, Y Bai, J Qu Water Research 248, 120859, 2024 | 2 | 2024 |
| PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer J Shang, C Peng, X Tang, Y Sun Bioinformatics 39 (Supplement_1), i30-i39, 2023 | 2 | 2023 |
| A binning tool to reconstruct viral haplotypes from assembled contigs J Chen, J Shang, J Wang, Y Sun BMC bioinformatics 20, 1-13, 2019 | 2 | 2019 |
| A robust simple linear iterative clustering algorithm S Li, J Huang, J Shang, X Wei 2017 IEEE 2nd International Conference on Signal and Image Processing (ICSIP …, 2017 | 2 | 2017 |
Yanni SunCity University of Hong KongVerified email at cityu.edu.hk
