| SARS-CoV-2 infection depends on cellular heparan sulfate and ACE2 TM Clausen, DR Sandoval, CB Spliid, J Pihl, HR Perrett, CD Painter, ... Cell 183 (4), 1043-1057. e15, 2020 | 1024 | 2020 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 651 | 2018 |
| A novel sparse compositional technique reveals microbial perturbations C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ... MSystems 4 (1), 10.1128/msystems. 00016-19, 2019 | 304* | 2019 |
| QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020 | 262 | 2020 |
| Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions L Narunsky-Haziza, GD Sepich-Poore, I Livyatan, O Asraf, C Martino, ... Cell 185 (20), 3789-3806. e17, 2022 | 183 | 2022 |
| Visualizing’omic feature rankings and log-ratios using Qurro MW Fedarko, C Martino, JT Morton, A González, G Rahman, CA Marotz, ... NAR genomics and bioinformatics 2 (2), lqaa023, 2020 | 121 | 2020 |
| Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing F Fouladi, MJ Bailey, WB Patterson, M Sioda, IC Blakley, AA Fodor, ... Environment international 138, 105604, 2020 | 111 | 2020 |
| Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ... Msystems 5 (2), 10.1128/msystems. 00901-19, 2020 | 102 | 2020 |
| Microbiota succession throughout life from the cradle to the grave C Martino, AH Dilmore, ZM Burcham, JL Metcalf, D Jeste, R Knight Nature Reviews Microbiology 20 (12), 707-720, 2022 | 90 | 2022 |
| Engineering the microbiome for animal health and conservation S Jin Song, DC Woodhams, C Martino, C Allaband, A Mu, ... Experimental Biology and Medicine 244 (6), 494-504, 2019 | 89 | 2019 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics C Martino, L Shenhav, CA Marotz, G Armstrong, D McDonald, ... Nature biotechnology 39 (2), 165-168, 2021 | 73 | 2021 |
| Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates LS Zaramela, C Martino, F Alisson-Silva, SD Rees, SL Diaz, L Chuzel, ... Nature microbiology 4 (12), 2082-2089, 2019 | 66 | 2019 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20, 1-14, 2019 | 55 | 2019 |
| Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection A Mu, D McDonald, AK Jarmusch, C Martino, C Brennan, M Bryant, ... Microbiome 9, 1-8, 2021 | 51 | 2021 |
| Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding SJ Song, J Wang, C Martino, L Jiang, WK Thompson, L Shenhav, ... Med 2 (8), 951-964. e5, 2021 | 51 | 2021 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... Microbiome 9 (1), 132, 2021 | 49* | 2021 |
| Insulin-regulated serine and lipid metabolism drive peripheral neuropathy MK Handzlik, JM Gengatharan, KE Frizzi, GH McGregor, C Martino, ... Nature 614 (7946), 118-124, 2023 | 47 | 2023 |
| Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature microbiology 7 (12), 2128-2150, 2022 | 47 | 2022 |
| The role of intestinal C‐type regenerating islet derived‐3 lectins for nonalcoholic steatohepatitis S Bluemel, L Wang, C Martino, S Lee, Y Wang, B Williams, A Horvath, ... Hepatology communications 2 (4), 393-406, 2018 | 43 | 2018 |
| Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome ACD Machado, SD Brown, A Lingaraju, V Sivaganesh, C Martino, A Chaix, ... Cell reports 40 (1), 2022 | 38 | 2022 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
