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David Peede
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Widespread introgression across a phylogeny of 155 Drosophila genomes
A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede, ERR D’agostino, ...
Current Biology 32 (1), 111-123. e5, 2022
1552022
Highly contiguous assemblies of 101 drosophilid genomes
BY Kim, JR Wang, DE Miller, O Barmina, E Delaney, A Thompson, ...
Elife 10, e66405, 2021
1162021
Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs
DR Matute, AA Comeault, E Earley, A Serrato-Capuchina, D Peede, ...
Genetics 214 (1), 211-230, 2020
382020
A need for standardized reporting of introgression: Insights from studies across eukaryotes
AJ Dagilis, D Peede, JM Coughlan, GI Jofre, ERR D'Agostino, ...
Evolution Letters 6 (5), 344-357, 2022
172022
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ...
Elife 12, RP84874, 2023
142023
15 years of introgression studies: quantifying gene flow across Eukaryotes
AJ Dagilis, D Peede, JM Coughlan, GI Jofre, ERR D’Agostino, ...
BioRxiv, 2021.06. 15.448399, 2021
132021
Paternally Inherited P-Element Copy Number Affects the Magnitude of Hybrid Dysgenesis in Drosophila simulans and D. melanogaster
A Serrato-Capuchina, J Wang, E Earley, D Peede, K Isbell, DR Matute
Genome Biology and Evolution 12 (6), 808-826, 2020
112020
Pure species discriminate against hybrids in the Drosophila melanogaster species subgroup
A Serrato-Capuchina, TD Schwochert, S Zhang, B Roy, D Peede, ...
Evolution 75 (7), 1753-1774, 2021
92021
Highly contiguous assemblies of 101 drosophilid genomes. eLife, 10
BY Kim, JR Wang, DE Miller, O Barmina, E Delaney, A Thompson, ...
eLife Sciences Publications Ltd, 2021
8*2021
P-elements strengthen reproductive isolation within the Drosophila simulans species complex
A Serrato-Capuchina, ERR D'Agostino, D Peede, B Roy, K Isbell, J Wang, ...
Evolution 75 (10), 2425-2440, 2021
72021
Population structure and introgression among recently differentiated Drosophila melanogaster populations
JM Coughlan, AJ Dagilis, A Serrato-Capuchina, H Elias, D Peede, K Isbell, ...
Biorxiv, 2021.06. 25.449842, 2021
72021
Widespread introgression across a phylogeny of 155 Drosophila genomes. bioRxiv
A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede, ER D’Agostino, ...
Jan, 2021
72021
Recent invasion of P transposable element into Drosophila yakuba
A Serrato-Capuchina, S Zhang, W Martin, D Peede, E Earley, DR Matute
bioRxiv, 453829, 2018
62018
Leveraging shared ancestral variation to detect local introgression
L Lopez Fang, D Peede, D Ortega-Del Vecchyo, EJ McTavish, ...
Plos Genetics 20 (1), e1010155, 2024
22024
The Utility of Ancestral and Derived Allele Sharing for Genome-Wide Inferences of Introgression
D Peede, D Ortega-Del Vecchyo, E Huerta-Sánchez
bioRxiv, 2022.12. 02.518851, 2022
22022
Patterns of Population Structure and Introgression Among Recently Differentiated Drosophila melanogaster Populations
JM Coughlan, AJ Dagilis, A Serrato-Capuchina, H Elias, D Peede, K Isbell, ...
Molecular Biology and Evolution 39 (11), msac223, 2022
22022
Toward the integration of speciation research
S Stankowski, AD Cutter, I Satokangas, BA Lerch, J Rolland, CM Smadja, ...
Evolutionary Journal of the Linnean Society 3 (1), kzae001, 2024
12024
Pharmacogenetic variation in Neanderthals and Denisovans and implications for human health and response to medications
TH Wroblewski, KE Witt, S Lee, RS Malhi, D Peede, E Huerta-Sánchez, ...
Genome biology and evolution 15 (12), evad222, 2023
12023
The MUC19 gene in Denisovans, Neanderthals, and Modern Humans: An Evolutionary History of Recurrent Introgression and Natural Selection
FA Villanea, D Peede, EJ Kaufman, V Añorve-Garibay, KE Witt, ...
bioRxiv, 2023
2023
Ancient Mongolian aurochs genomes reveal sustained introgression and management in East Asia
K Brunson, KE Witt, S Monge, S Williams, D Peede, D Odsuren, ...
bioRxiv, 2023
2023
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Articles 1–20