| Designing quantum memories with embedded control: photonic circuits for autonomous quantum error correction J Kerckhoff, HI Nurdin, DS Pavlichin, H Mabuchi Physical Review Letters 105 (4), 040502, 2010 | 157 | 2010 |
| Neural circuits mediate electrosensory behavior in Caenorhabditis elegans CV Gabel, H Gabel, D Pavlichin, A Kao, DA Clark, ADT Samuel Journal of Neuroscience 27 (28), 7586-7596, 2007 | 139 | 2007 |
| Single Molecule Analysis Research Tool (SMART): an integrated approach for analyzing single molecule data M Greenfeld, DS Pavlichin, H Mabuchi, D Herschlag PLoS One 7 (2), e30024, 2012 | 99 | 2012 |
| Specification of photonic circuits using quantum hardware description language N Tezak, A Niederberger, DS Pavlichin, G Sarma, H Mabuchi Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2012 | 79 | 2012 |
| Approximate Profile Maximum Likelihood. DS Pavlichin, J Jiao, T Weissman Journal of Machine Learning Research 20 (122), 1-55, 2019 | 51 | 2019 |
| Genomic data compression M Hernaez, D Pavlichin, T Weissman, I Ochoa Annual Review of Biomedical Data Science 2, 19-37, 2019 | 49 | 2019 |
| The human genome contracts again DS Pavlichin, T Weissman, G Yona Bioinformatics 29 (17), 2199-2202, 2013 | 45 | 2013 |
| Design of nanophotonic circuits for autonomous subsystem quantum error correction J Kerckhoff, DS Pavlichin, H Chalabi, H Mabuchi New Journal of Physics 13 (5), 055022, 2011 | 45 | 2011 |
| Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies BT Lau, D Pavlichin, AC Hooker, AF Almeda, G Shin, J Chen, MK Sahoo, ... medRxiv, 2020 | 28 | 2020 |
| Kinetic and thermodynamic framework for P4-P6 RNA reveals tertiary motif modularity and modulation of the folding preferred pathway N Bisaria, M Greenfeld, C Limouse, DS Pavlichin, H Mabuchi, ... Proceedings of the National Academy of Sciences 113 (34), E4956-E4965, 2016 | 27 | 2016 |
| The dressed atom as binary phase modulator: towards attojoule/edge optical phase-shift keying J Kerckhoff, MA Armen, DS Pavlichin, H Mabuchi Optics express 19 (7), 6478-6486, 2011 | 19 | 2011 |
| The quest to save genomics: Unless researchers solve the looming data compression problem, biomedical science could stagnate D Pavlichin, T Weissman, G Mably IEEE Spectrum 55 (9), 27-31, 2018 | 17 | 2018 |
| Photonic circuits for iterative decoding of a class of low-density parity-check codes DS Pavlichin, H Mabuchi New Journal of Physics 16 (10), 105017, 2014 | 17 | 2014 |
| Roles of Long-Range Tertiary Interactions in Limiting Dynamics of the Tetrahymena Group I Ribozyme X Shi, N Bisaria, TL Benz-Moy, S Bonilla, DS Pavlichin, D Herschlag Journal of the American Chemical Society 136 (18), 6643-6648, 2014 | 17 | 2014 |
| Quantum channel capacities per unit cost D Ding, DS Pavlichin, MM Wilde IEEE Transactions on Information Theory 65 (1), 418-435, 2018 | 14 | 2018 |
| Transformation of quantum photonic circuit models by term rewriting G Sarma, R Hamerly, N Tezak, DS Pavlichin, H Mabuchi IEEE Photonics Journal 5 (1), 7500111-7500111, 2013 | 11 | 2013 |
| Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data M Greenfeld, JW Van de Meent, DS Pavlichin, H Mabuchi, CH Wiggins, ... BMC bioinformatics 16 (1), 1-4, 2015 | 10 | 2015 |
| Unique k-mer sequences for validating cancer-related substitution, insertion and deletion mutations HJ Lee, A Shuaibi, JM Bell, DS Pavlichin, HP Ji NAR cancer 2 (4), zcaa034, 2020 | 8 | 2020 |
| Chained Kullback-Leibler divergences DS Pavlichin, T Weissman 2016 IEEE International Symposium on Information Theory (ISIT), 580-584, 2016 | 7 | 2016 |
| Coherent-feedback formulation of continuous quantum error correction protocols J Kerckhoff, HI Nurdin, DS Pavlichin, H Mabuchi Quantum Electronics and Laser Science Conference, JThF5, 2010 | 5 | 2010 |
