Follow
Pengzhi Zhang
Title
Cited by
Cited by
Year
Protein recognition and selection through conformational and mutually induced fit
Q Wang, P Zhang, L Hoffman, S Tripathi, D Homouz, Y Liu, MN Waxham, ...
Proceedings of the National Academy of Sciences 110 (51), 20545-20550, 2013
552013
Computational Study of Charge-Transfer Dynamics in the Carotenoid–Porphyrin–C60 Molecular Triad Solvated in Explicit Tetrahydrofuran and Its Spectroscopic …
X Sun, P Zhang, Y Lai, KL Williams, MS Cheung, BD Dunietz, E Geva
The Journal of Physical Chemistry C 122 (21), 11288-11299, 2018
442018
Conformational frustration in calmodulin–target recognition
S Tripathi, Q Wang, P Zhang, L Hoffman, MN Waxham, MS Cheung
Journal of Molecular Recognition 28 (2), 74-86, 2015
242015
Molecular dynamics ensemble refinement of intrinsically disordered peptides according to deconvoluted spectra from circular dichroism
JC Ezerski, P Zhang, NC Jennings, MN Waxham, MS Cheung
Biophysical journal 118 (7), 1665-1678, 2020
192020
A relay velocity model infers cell-dependent RNA velocity
S Li, P Zhang, W Chen, L Ye, KW Brannan, NT Le, J Abe, JP Cooke, ...
Nature biotechnology 42 (1), 99-108, 2024
182024
Molecular-Level Exploration of the Structure-Function Relations Underlying Interfacial Charge Transfer in the Subphthalocyanine/ Organic Photovoltaic System
J Tinnin, S Bhandari, P Zhang, H Aksu, B Maiti, E Geva, BD Dunietz, ...
Physical Review Applied 13 (5), 054075, 2020
162020
Opposing intermolecular tuning of Ca2+ affinity for calmodulin by neurogranin and CaMKII peptides
P Zhang, S Tripathi, H Trinh, MS Cheung
Biophysical Journal 112 (6), 1105-1119, 2017
162017
Induced polarization restricts the conformational distribution of a light-harvesting molecular triad in the ground state
ON Starovoytov, P Zhang, P Cieplak, MS Cheung
Physical Chemistry Chemical Physics 19 (34), 22969-22980, 2017
142017
Determining the atomic charge of calcium ion requires the information of its coordination geometry in an EF-hand motif
P Zhang, J Han, P Cieplak, M Cheung
The Journal of Chemical Physics 154 (12), 2021
82021
On the Interplay between Electronic Structure and Polarizable Force Fields When Calculating Solution-Phase Charge-Transfer Rates
J Han, P Zhang, H Aksu, B Maiti, X Sun, E Geva, BD Dunietz, MS Cheung
Journal of Chemical Theory and Computation 16 (10), 6481-6490, 2020
72020
Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca2+-Calmodulin
J Nde, P Zhang, JC Ezerski, W Lu, K Knapp, PG Wolynes, MS Cheung
Frontiers in Molecular Biosciences 8, 661322, 2021
62021
Comprehensive spectral libraries for various rabbit eye tissue proteomes
G Qin, P Zhang, M Sun, W Fu, C Cai
Scientific Data 9 (1), 111, 2022
52022
CTRAMER: An open-source software package for correlating interfacial charge transfer rate constants with donor/acceptor geometries in organic photovoltaic materials
J Tinnin, H Aksu, Z Tong, P Zhang, E Geva, BD Dunietz, X Sun, ...
The Journal of Chemical Physics 154 (21), 2021
52021
Correlating Interfacial Charge Transfer Rates with Interfacial Molecular Structure in the Tetraphenyldibenzoperiflanthene/C70 Organic Photovoltaic System
J Tinnin, S Bhandari, P Zhang, E Geva, BD Dunietz, X Sun, MS Cheung
The Journal of Physical Chemistry Letters 13 (3), 763-769, 2022
42022
Experiment and Simulation Reveal Residue Details for How Target Binding Tunes Calmodulin’s Calcium-Binding Properties
J Nde, P Zhang, MN Waxham, MS Cheung
The Journal of Physical Chemistry B 127 (13), 2900-2908, 2023
12023
Protein Association Involving Intrinsic Disordered Proteins and Its Regulation on Synaptic Plasticity through Modulating CA2+ Binding
P Zhang
2016
The system can't perform the operation now. Try again later.
Articles 1–16