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Hongbo Liu
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QDMR: a quantitative method for identification of differentially methylated regions by entropy
Y Zhang*✉, H Liu*, J Lv*, X Xiao, J Zhu, X Liu, J Su, X Li, Q Wu, F Wang, ...
Nucleic acids research 39 (9), e58-e58, 2011
1492011
DiseaseMeth version 2.0: a major expansion and update of the human disease methylation database
Y Xiong*, Y Wei*, Y Gu*, S Zhang, J Lyu, B Zhang, C Chen, J Zhu, ...
Nucleic acids research 45 (D1), D888-D895, 2017
1372017
Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets
Z Miao, MS Balzer, Z Ma, H Liu, J Wu, R Shrestha, T Aranyi, A Kwan, ...
Nature communications 12 (1), 2277, 2021
1332021
DiseaseMeth: a human disease methylation database
J Lv*, H Liu*, J Su*, X Wu, H Liu, B Li, X Xiao, F Wang, Q Wu✉, Y Zhang✉
Nucleic acids research 40 (D1), D1030-D1035, 2011
1162011
The nuclear receptor ESRRA protects from kidney disease by coupling metabolism and differentiation
P Dhillon, J Park, CH Del Pozo, L Li, T Doke, S Huang, J Zhao, HM Kang, ...
Cell Metabolism 33 (2), 379-394. e8, 2021
1052021
HHMD: the human histone modification database
Y Zhang*✉, J Lv*, H Liu*, J Zhu, J Su, Q Wu, Y Qi, F Wang, X Li✉
Nucleic acids research 38 (suppl_1), D149-D154, 2009
1022009
SEA: a super-enhancer archive
Y Wei*, S Zhang*, S Shang*, B Zhang, S Li, X Wang, F Wang, J Su, Q Wu, ...
Nucleic acids research 44 (D1), D172-D179, 2016
982016
Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments
X Sheng, Y Guan, Z Ma, J Wu, H Liu, C Qiu, S Vitale, Z Miao, MJ Seasock, ...
Nature genetics 53 (9), 1322-1333, 2021
962021
Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the …
H Liu*✉, X Liu*, S Zhang*, J Lv, S Li, S Shang, S Jia, Y Wei, F Wang, J Su, ...
Nucleic acids research 44 (1), 75-94, 2016
822016
Specific breast cancer prognosis‐subtype distinctions based on DNA methylation patterns
S Zhang, Y Wang, Y Gu, J Zhu, C Ci, Z Guo, C Chen, Y Wei, W Lv, H Liu, ...
Molecular Oncology 12 (7), 1047-1060, 2018
802018
Epigenomic and transcriptomic analyses define core cell types, genes and targetable mechanisms for kidney disease
H Liu, T Doke, D Guo, X Sheng, Z Ma, J Park, HMT Vy, GN Nadkarni, ...
Nature Genetics 54 (7), 950-962, 2022
732022
Urinary single-cell profiling captures the cellular diversity of the kidney
A Abedini, YO Zhu, S Chatterjee, G Halasz, K Devalaraja-Narashimha, ...
Journal of the American Society of Nephrology 32 (3), 614-627, 2021
722021
Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features
J Lv*, H Liu*, Z Huang*, J Su, H He, Y Xiu, Y Zhang, Q Wu✉
Nucleic acids research 41 (22), 10044-10061, 2013
722013
CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data
J Su*, H Yan*, Y Wei*, H Liu, H Liu, F Wang, J Lv, Q Wu, Y Zhang✉
Nucleic acids research 41 (1), e4-e4, 2012
662012
The identification of specific methylation patterns across different cancers
C Zhang*, H Zhao*, J Li, H Liu, F Wang, Y Wei, J Su, D Zhang, T Liu, ...
PloS one 10 (3), e0120361, 2015
652015
Genome-wide dynamic changes of DNA methylation of repetitive elements in human embryonic stem cells and fetal fibroblasts
J Su, X Shao, H Liu, S Liu, Q Wu, Y Zhang
Genomics 99 (1), 10-17, 2012
562012
Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data
J Lv*, W Cui*, H Liu*, H He, Y Xiu, J Guo, H Liu, Q Liu, T Zeng, Y Chen, ...
PloS one 8 (8), e71152, 2013
552013
Transcriptome-wide association analysis identifies DACH1 as a kidney disease risk gene that contributes to fibrosis
T Doke, S Huang, C Qiu, H Liu, Y Guan, H Hu, Z Ma, J Wu, Z Miao, ...
The Journal of Clinical Investigation 131 (10), 2021
542021
CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes
J Su*, Y Zhang*✉, J Lv*, H Liu, X Tang, F Wang, Y Qi, Y Feng, X Li✉
Nucleic acids research 38 (1), e6-e6, 2009
522009
A single genetic locus controls both expression of DPEP1/CHMP1A and kidney disease development via ferroptosis
Y Guan, X Liang, Z Ma, H Hu, H Liu, Z Miao, A Linkermann, JN Hellwege, ...
Nature communications 12 (1), 5078, 2021
502021
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