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Shane Lofgren
Shane Lofgren
Manifold Bio
Verified email at manifold.bio - Homepage
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Cited by
Cited by
Year
CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer
K Weiskopf, NS Jahchan, PJ Schnorr, S Cristea, AM Ring, RL Maute, ...
The Journal of clinical investigation 126 (7), 2610-2620, 2016
3942016
Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma
PK Mazur, A Herner, SS Mello, M Wirth, S Hausmann, FJ Sánchez-Rivera, ...
Nature medicine 21 (10), 1163-1171, 2015
3712015
Antigen identification for orphan T cell receptors expressed on tumor-infiltrating lymphocytes
MH Gee, A Han, SM Lofgren, JF Beausang, JL Mendoza, ME Birnbaum, ...
Cell 172 (3), 549-563. e16, 2018
2712018
Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations
A Tomczak, JM Mortensen, R Winnenburg, C Liu, DT Alessi, V Swamy, ...
Scientific reports 8 (1), 5115, 2018
1492018
Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases
F Vallania, A Tam, S Lofgren, S Schaffert, TD Azad, E Bongen, W Haynes, ...
Nature communications 9 (1), 4735, 2018
1392018
METTL13 methylation of eEF1A increases translational output to promote tumorigenesis
S Liu, S Hausmann, SM Carlson, ME Fuentes, JW Francis, R Pillai, ...
Cell 176 (3), 491-504. e21, 2019
1322019
Empowering multi-cohort gene expression analysis to increase reproducibility
WA Haynes, F Vallania, C Liu, E Bongen, A Tomczak, M Andres-Terrè, ...
PACIFIC SYMPOSIUM ON BIOCOMPUTING 2017, 144-153, 2017
1292017
Synthetic promoters capable of driving robust nuclear gene expression in the green alga Chlamydomonas reinhardtii
MA Scranton, JT Ostrand, DR Georgianna, SM Lofgren, D Li, RC Ellis, ...
Algal research 15, 135-142, 2016
882016
Elevated NSD3 histone methylation activity drives squamous cell lung cancer
G Yuan, NM Flores, S Hausmann, SM Lofgren, V Kharchenko, ...
Nature 590 (7846), 504-508, 2021
822021
Coordination of stress signals by the lysine methyltransferase SMYD2 promotes pancreatic cancer
N Reynoird, PK Mazur, T Stellfeld, NM Flores, SM Lofgren, SM Carlson, ...
Genes & development 30 (7), 772-785, 2016
822016
Integrated, multicohort analysis of systemic sclerosis identifies robust transcriptional signature of disease severity
S Lofgren, M Hinchcliff, M Carns, T Wood, K Aren, E Arroyo, P Cheung, ...
JCI insight 1 (21), 2016
712016
SETD5-coordinated chromatin reprogramming regulates adaptive resistance to targeted pancreatic cancer therapy
Z Wang, S Hausmann, R Lyu, TM Li, SM Lofgren, NM Flores, ME Fuentes, ...
Cancer cell 37 (6), 834-849. e13, 2020
612020
Gene expression analysis to assess the relevance of rodent models to human lung injury
TE Sweeney, S Lofgren, P Khatri, AJ Rogers
American journal of respiratory cell and molecular biology 57 (2), 184-192, 2017
272017
Leveraging heterogeneity across multiple data sets increases accuracy of cell-mixture deconvolution and reduces biological and technical biases
F Vallania, A Tam, S Lofgren, S Schaffert, TD Azad, E Bongen, M Alsup, ...
bioRxiv, 206466, 2017
122017
High-throughput quantitative histology in systemic sclerosis skin disease using computer vision
C Correia, S Mawe, S Lofgren, RG Marangoni, J Lee, R Saber, K Aren, ...
Arthritis research & therapy 22, 1-11, 2020
102020
Structure-based prediction of transcription factor binding sites
J Guo, S Lofgren, A Farrel
Tsinghua Science and Technology 19 (6), 568-577, 2014
92014
Structure-based prediction of transcription factor binding sites
J Guo, S Lofgren, A Farrel
Tsinghua Science and Technology 19 (6), 568-577, 2014
92014
Integrated molecular, clinical, and ontological analysis identifies overlooked disease relationships
WA Haynes, R Vashisht, F Vallania, C Liu, GL Gaskin, E Bongen, ...
bioRxiv, 214833, 2017
6*2017
Multiplexed transcriptomic profiling of the fate of human CAR T cells in vivo via genetic barcoding with shielded small nucleotides
X Lu, SM Lofgren, Y Zhao, PK Mazur
Nature Biomedical Engineering 7 (9), 1170-1187, 2023
12023
Inhibition of the MEK5-ERK5 signaling pathway blocks pancreatic tumorigenesis
S Hausmann, AE Kasapoglu, AB Morales, S Lofgren, PK Mazur
CANCER RESEARCH 82 (22), 35-36, 2022
2022
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