Follow
Federica Battistini
Federica Battistini
Post doc, IRB Barcelona ; Prof. Associat UB Barcelona
Verified email at irbbarcelona.org
Title
Cited by
Cited by
Year
Parmbsc1: a refined force field for DNA simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature methods 13 (1), 55-58, 2016
8522016
Colibactin DNA-damage signature indicates mutational impact in colorectal cancer
PJ Dziubańska-Kusibab, H Berger, F Battistini, BAM Bouwman, A Iftekhar, ...
Nature medicine 26 (7), 1063-1069, 2020
1752020
Impact of methylation on the physical properties of DNA
A Pérez, CL Castellazzi, F Battistini, K Collinet, O Flores, O Deniz, ...
Biophysical journal 102 (9), 2140-2148, 2012
1342012
Long-timescale dynamics of the Drew–Dickerson dodecamer
PD Dans, L Danilāne, I Ivani, T Dršata, F Lankaš, A Hospital, J Walther, ...
Nucleic Acids Research 44 (9), 4052-4066, 2016
1212016
Unraveling the sequence-dependent polymorphic behavior of d (CpG) steps in B-DNA
PD Dans, I Faustino, F Battistini, K Zakrzewska, R Lavery, M Orozco
Nucleic acids research 42 (18), 11304-11320, 2014
852014
Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations
G Portella, F Battistini, M Orozco
PLoS computational biology 9 (11), e1003354, 2013
612013
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data
A Hospital, P Andrio, C Cugnasco, L Codo, Y Becerra, PD Dans, ...
Nucleic acids research 44 (D1), D272-D278, 2016
482016
Repair of UV-induced DNA damage independent of nucleotide excision repair is masked by MUTYH
A Mazouzi, F Battistini, SC Moser, JF da Silva, M Wiedner, M Owusu, ...
Molecular cell 68 (4), 797-807. e7, 2017
462017
Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast
Ö Deniz, O Flores, F Battistini, A Pérez, M Soler-López, M Orozco
BMC genomics 12, 1-11, 2011
412011
Structural mechanics of DNA wrapping in the nucleosome
F Battistini, CA Hunter, EJ Gardiner, MJ Packer
Journal of molecular biology 396 (2), 264-279, 2010
392010
How B-DNA dynamics decipher sequence-selective protein recognition
F Battistini, A Hospital, D Buitrago, D Gallego, PD Dans, JL Gelpí, ...
Journal of molecular biology 431 (19), 3845-3859, 2019
262019
DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p
A Chakraborty, S Lyonnais, F Battistini, A Hospital, G Medici, R Prohens, ...
Nucleic Acids Research 45 (2), 951-967, 2017
232017
Structure-based identification of new high-affinity nucleosome binding sequences
F Battistini, CA Hunter, IK Moore, J Widom
Journal of molecular biology 420 (1-2), 8-16, 2012
232012
DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region
A Cuppari, P Fernández-Millán, F Battistini, A Tarrés-Solé, S Lyonnais, ...
Nucleic acids research 47 (12), 6519-6537, 2019
202019
Protein flexibility and synergy of HMG domains underlie U-turn bending of DNA by TFAM in solution
A Rubio-Cosials, F Battistini, A Gansen, A Cuppari, P Bernadó, M Orozco, ...
Biophysical journal 114 (10), 2386-2396, 2018
182018
Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?
G Da Rosa, L Grille, V Calzada, K Ahmad, JP Arcon, F Battistini, G Bayarri, ...
Biophysical Reviews, 1-11, 2021
162021
Surviving the deluge of biosimulation data
A Hospital, F Battistini, R Soliva, JL Gelpí, M Orozco
Wiley Interdisciplinary Reviews: Computational Molecular Science 10 (3), e1449, 2020
162020
Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning
D Buitrago, L Codo, R Illa, P de Jorge, F Battistini, O Flores, G Bayarri, ...
Nucleic Acids Research 47 (18), 9511-9523, 2019
132019
DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors
S Barissi, A Sala, M Wieczór, F Battistini, M Orozco
Nucleic Acids Research 50 (16), 9105-9114, 2022
112022
Multiscale modeling of thiol overoxidation in peroxiredoxins by hydrogen peroxide
JA Semelak, F Battistini, R Radi, M Trujillo, A Zeida, DA Estrin
Journal of Chemical Information and Modeling 60 (2), 843-853, 2019
102019
The system can't perform the operation now. Try again later.
Articles 1–20