| Transparency and reproducibility in artificial intelligence B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, ... Nature 586 (7829), E14-E16, 2020 | 333 | 2020 |
| A statistical approach for identifying differential distributions in single-cell RNA-seq experiments KD Korthauer, LF Chu, MA Newton, Y Li, J Thomson, R Stewart, ... Genome biology 17, 1-15, 2016 | 299 | 2016 |
| A somatically acquired enhancer of the androgen receptor is a noncoding driver in advanced prostate cancer DY Takeda, S Spisák, JH Seo, C Bell, E O’Connor, K Korthauer, D Ribli, ... Cell 174 (2), 422-432. e13, 2018 | 276 | 2018 |
| A practical guide to methods controlling false discoveries in computational biology K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ... Genome biology 20, 1-21, 2019 | 269 | 2019 |
| Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes PV Nuzzo, JE Berchuck, K Korthauer, S Spisak, AH Nassar, S Abou Alaiwi, ... Nature medicine 26 (7), 1041-1043, 2020 | 209 | 2020 |
| Prostate cancer reactivates developmental epigenomic programs during metastatic progression MM Pomerantz, X Qiu, Y Zhu, DY Takeda, W Pan, SC Baca, A Gusev, ... Nature genetics 52 (8), 790-799, 2020 | 183 | 2020 |
| Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing K Korthauer, S Chakraborty, Y Benjamini, RA Irizarry Biostatistics, kxy007, 2019 | 131 | 2019 |
| High‐throughput identification of RNA nuclear enrichment sequences CJ Shukla, AL McCorkindale, C Gerhardinger, KD Korthauer, MN Cabili, ... The EMBO journal 37 (6), e98452, 2018 | 109 | 2018 |
| The Genetic Network Controlling the Arabidopsis Transcriptional Response to Pseudomonas syringae pv. maculicola: Roles of Major Regulators and the … L Wang, RM Mitra, KD Hasselmann, M Sato, L Lenarz-Wyatt, JD Cohen, ... Molecular plant-microbe interactions 21 (11), 1408-1420, 2008 | 89 | 2008 |
| Reprogramming of the FOXA1 cistrome in treatment-emergent neuroendocrine prostate cancer SC Baca, DY Takeda, JH Seo, J Hwang, SY Ku, R Arafeh, T Arnoff, ... Nature communications 12 (1), 1979, 2021 | 88 | 2021 |
| CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity AC Watt, P Cejas, MJ DeCristo, O Metzger-Filho, EYN Lam, X Qiu, ... Nature Cancer 2 (1), 34-48, 2021 | 58 | 2021 |
| Plasma cell-free DNA variant analysis compared with methylated DNA analysis in renal cell carcinoma K Lasseter, AH Nassar, L Hamieh, JE Berchuck, PV Nuzzo, K Korthauer, ... Genetics in Medicine 22 (8), 1366-1373, 2020 | 52 | 2020 |
| Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer C Bodelon, S Vinokurova, JN Sampson, JA den Boon, JL Walker, ... Carcinogenesis 37 (2), 188-196, 2016 | 52 | 2016 |
| Androgen receptor and MYC equilibration centralizes on developmental super-enhancer H Guo, Y Wu, M Nouri, S Spisak, JW Russo, AG Sowalsky, MM Pomerantz, ... Nature communications 12 (1), 7308, 2021 | 43 | 2021 |
| MADGiC: a model-based approach for identifying driver genes in cancer KD Korthauer, C Kendziorski Bioinformatics 31 (10), 1526-1535, 2015 | 41 | 2015 |
| Detecting neuroendocrine prostate cancer through tissue-informed cell-free DNA methylation analysis JE Berchuck, SC Baca, HM McClure, K Korthauer, HK Tsai, PV Nuzzo, ... Clinical Cancer Research 28 (5), 928-938, 2022 | 32 | 2022 |
| Methods for collapsing multiple rare variants in whole‐genome sequence data YJ Sung, KD Korthauer, MD Swartz, CD Engelman Genetic epidemiology 38 (S1), S13-S20, 2014 | 24 | 2014 |
| Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma PC Lee, S Klaeger, PM Le, K Korthauer, J Cheng, ... The Journal of clinical investigation 132 (13), 2022 | 16 | 2022 |
| Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation K Korthauer, RA Irizarry bioRxiv, 381145, 2018 | 16 | 2018 |
| Advances in Statistical Bioinformatics: Models and Integrative Inference for High-Throughput Data KA Do, ZS Qin, M Vannucci Cambridge University Press, 2013 | 15 | 2013 |
