| Regulatory genomic circuitry of human disease loci by integrative epigenomics CA Boix, BT James, YP Park, W Meuleman, M Kellis Nature 590 (7845), 300-307, 2021 | 244 | 2021 |
| Benchmarking of alignment-free sequence comparison methods A Zielezinski, HZ Girgis, G Bernard, CA Leimeister, K Tang, T Dencker, ... Genome Biology 20 (1), 144, 2019 | 185 | 2019 |
| MeShClust: an intelligent tool for clustering DNA sequences BT James, BB Luczak, HZ Girgis Nucleic acids research 46 (14), e83-e83, 2018 | 89 | 2018 |
| GENCODE: reference annotation for the human and mouse genomes in 2023 A Frankish, S Carbonell-Sala, M Diekhans, I Jungreis, JE Loveland, ... Nucleic acids research 51 (D1), D942-D949, 2023 | 78 | 2023 |
| A survey and evaluations of histogram-based statistics in alignment-free sequence comparison BB Luczak, BT James, HZ Girgis Briefings in bioinformatics 20 (4), 1222-1237, 2019 | 57 | 2019 |
| Human microglial state dynamics in Alzheimer’s disease progression N Sun, MB Victor, YP Park, X Xiong, AN Scannail, N Leary, S Prosper, ... Cell 186 (20), 4386-4403. e29, 2023 | 46 | 2023 |
| Epigenomic dissection of Alzheimer’s disease pinpoints causal variants and reveals epigenome erosion X Xiong, BT James, CA Boix, YP Park, K Galani, MB Victor, N Sun, L Hou, ... Cell 186 (20), 4422-4437. e21, 2023 | 28 | 2023 |
| Identity: rapid alignment-free prediction of sequence alignment identity scores using self-supervised general linear models HZ Girgis, BT James, BB Luczak NAR genomics and bioinformatics 3 (1), lqab001, 2021 | 15* | 2021 |
| Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models A Velasco, BT James, VD Wells, HZ Girgis Bioinformatics, btz551, 2019 | 10 | 2019 |
| MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences BT James, HZ Girgis BioRxiv, 451278, 2018 | 6 | 2018 |
| An encyclopedia of enhancer-gene regulatory interactions in the human genome AR Gschwind, KS Mualim, A Karbalayghareh, MU Sheth, KK Dey, ... bioRxiv, 2023 | 4 | 2023 |
| Gamma entrainment using audiovisual stimuli alleviates chemobrain pathology and cognitive impairment induced by chemotherapy in mice TH Kim, BT James, MC Kahn, C Blanco-Duque, F Abdurrob, MR Islam, ... Science Translational Medicine 16 (737), eadf4601, 2024 | 3 | 2024 |
| Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease L Hou, X Xiong, Y Park, C Boix, B James, N Sun, L He, A Patel, Z Zhang, ... Nature Genetics 55 (10), 1665-1676, 2023 | 3 | 2023 |
| Engineered 3D immuno-glial-neurovascular human brain model AE Stanton, A Bubnys, E Agbas, B James, DS Park, A Jiang, RL Pinals, ... bioRxiv, 2023.08. 15.553453, 2023 | 3 | 2023 |
| Unraveling the Epigenetic Landscape of CompulsiveLike Alcohol Drinking D da Silva, E Murray, I Bleimeister, R Linville, B James, M Kellis, ... NEUROPSYCHOPHARMACOLOGY 48, 415-415, 2023 | | 2023 |
| Correlation-based Linking of Epigenomic Regions to Target Genes in Bulk and Single Cell Epigenomic Data BT James Massachusetts Institute of Technology, 2023 | | 2023 |
| A Multi-Cellular Brain-on-Chip with Integrated Vasculature RL Pinals, A Stanton, A Bubnys, DS Park, N Truong, E Abgas, O Cerit, ... 2022 AIChE Annual Meeting, 2022 | | 2022 |
Hani Z. GirgisTexas A&M University-Kingsville, Bioinformatics Toolsmith LaboratoryVerified email at buffalo.edu
