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Gang Li
Gang Li
University of Washington at Seattle
Verified email at uw.edu - Homepage
Title
Cited by
Cited by
Year
SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection
Y Yang, G Li, H Qian, K Wilhelmsen, Y Shen, Y Li
Briefings in Bioinformatics, bbaa097, 2020
212020
Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath
X Ren, M Wang, B Li, K Jamieson, L Zheng, IR Jones, B Li, MA Takagi, ...
Science Advances 7 (38), eabi4360, 2021
192021
Identification of potentially functional circRNAs and prediction of circRNA‐miRNA‐mRNA regulatory network in periodontitis: Bridging the gap between bioinformatics and clinical …
W Yu, Q Gu, D Wu, W Zhang, G Li, L Lin, JM Lowe, S Hu, TW Li, Z Zhou, ...
Journal of Periodontal Research, 2022
102022
Dropout imputation and batch effect correction for single-cell RNA sequencing data
G Li, Y Yang, E Van Buren, Y Li
Journal of Bio-X Research 2 (04), 169-177, 2019
102019
iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement
Y Yang, G Li, Y Xie, L Wang, Y Yang, J Liu, L Qian, Y Li
Briefings in Bioinformatics, bbab122, 2021
62021
DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network
Y Li, J Wen, G Li, J Chen, Q Sun, W Liu, W Guan, B Lai, J Szatkiewicz, ...
Research Square, 2023
42023
A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data
L Huang, Y Yang, G Li, M Jiang, J Wen, A Abnousi, JD Rosen, M Hu, Y Li
Briefings in Bioinformatics 23 (3), bbac145, 2022
42022
Machine learning and deep learning in genetics and genomics
D Wu, DS Karhade, M Pillai, MZ Jiang, L Huang, G Li, H Cho, J Roach, ...
Machine Learning in Dentistry, 163-181, 2021
42021
ExpressHeart: Web Portal to Visualize Transcriptome Profiles of Non-Cardiomyocyte Cells
G Li, C Luan, Y Dong, Y Xie, SC Zentz, R Zelt, J Roach, J Liu, L Qian, Y Li, ...
International Journal of Molecular Sciences 22 (16), 8943, 2021
32021
CUE: CpG impUtation ensemble for DNA methylation levels across the human methylation450 (HM450) and EPIC (HM850) BeadChip platforms
G Li, L Raffield, M Logue, MW Miller, HP Santos Jr, TM O’Shea, RC Fry, ...
Epigenetics 16 (8), 851-861, 2021
32021
Redox-active endosomes mediate α5β1 integrin signaling and promote chondrocyte matrix metalloproteinase production in osteoarthritis
MZ Miao, QP Su, Y Cui, EM Bahnson, G Li, M Wang, Y Yang, JA Collins, ...
Science Signaling 16 (809), eadf8299, 2023
22023
Deep fiducial inference
G Li, J Hannig
Stat, e308, 2020
22020
Multi-condition and multi-modal temporal profile inference during mouse embryonic development
R Zhang, C Qiu, G Filippova, G Li, J Shendure, JP Vert, X Deng, ...
bioRxiv, 2024.03. 03.583179, 2024
2024
Single-Cell Transcriptomic Analysis of Dental Pulp and Periodontal Ligament Stem Cells
Y Yang, T Alves, MZ Miao, YC Wu, G Li, J Lou, H Hasturk, TE Van Dyke, ...
Journal of Dental Research 103 (1), 71-80, 2024
2024
Pseudotime analysis for time-series single-cell sequencing and imaging data
G Li, HJ Kim, S Pendyala, R Zhang, CM Disteche, JP Vert, X Deng, ...
bioRxiv, 2023.11. 03.565575, 2023
2023
Enhancing Hi-C contact matrices for loop detection with Capricorn, a multi-view diffusion model
T Fang, Y Liu, A Woicik, M Lu, A Jha, X Wang, G Li, B Hristov, Z Liu, H Xu, ...
2023
LSMMD-MA: Scaling multimodal data integration for single-cell genomics data analysis
L Meng-Papaxanthos, R Zhang, G Li, M Cuturi, WS Noble, JP Vert
Bioinformatics, 2023
2023
DNA Methylation Imputation Across Platforms
G Li, G Zhang, Y Li
Epigenome-Wide Association Studies: Methods and Protocols, 137-151, 2022
2022
Coupling Machine Learning with Fiducial Inference, Genetics and Epigenetics
G Li
The University of North Carolina at Chapel Hill, 2021
2021
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Articles 1–19