GPS-PAIL: prediction of lysine acetyltransferase-specific modification sites from protein sequences W Deng, C Wang, Y Zhang, Y Xu, S Zhang, Z Liu, Y Xue Scientific reports 6 (1), 39787, 2016 | 107 | 2016 |
WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes Y Xu, S Zhang, S Lin, Y Guo, W Deng, Y Zhang, Y Xue Nucleic acids research, gkw1011, 2016 | 97 | 2016 |
dbPAF: an integrative database of protein phosphorylation in animals and fungi S Ullah, S Lin, Y Xu, W Deng, L Ma, Y Zhang, Z Liu, Y Xue Scientific reports 6 (1), 23534, 2016 | 79 | 2016 |
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations J Zhou, Y Xu, S Lin, Y Guo, W Deng, Y Zhang, A Guo, Y Xue Nucleic acids research 46 (D1), D447-D453, 2018 | 65 | 2018 |
ESPRESSO: robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data Y Gao, F Wang, R Wang, E Kutschera, Y Xu, S Xie, Y Wang, ... Science Advances 9 (3), eabq5072, 2023 | 26 | 2023 |
IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing Y Pan, JW Phillips, BD Zhang, M Noguchi, E Kutschera, J McLaughlin, ... Proceedings of the National Academy of Sciences 120 (21), e2221116120, 2023 | 12 | 2023 |
Longitudinal large-scale semiquantitative proteomic data stability across multiple instrument platforms C Lu, T Glisovic-Aplenc, KM Bernt, K Nestler, J Cesare, L Cao, H Lee, ... Journal of Proteome Research 20 (11), 5203-5211, 2021 | 3 | 2021 |
TEQUILA-seq: a versatile and low-cost method for targeted long-read RNA sequencing F Wang, Y Xu, R Wang, B Zhang, N Smith, A Notaro, S Gaerlan, ... Nature Communications 14 (1), 4760, 2023 | 2 | 2023 |
Proteotranscriptomic Strategy to Discover Acute Myeloid Leukemia Immunotherapy Targets L Cao, Y Xu, T Glisovic-Aplenc, K Nestler, S Gill, KM Bernt, BA Garcia, ... Blood 140 (Supplement 1), 3425-3426, 2022 | | 2022 |