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Yang Xu
Yang Xu
Verified email at pennmedicine.upenn.edu
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Year
GPS-PAIL: prediction of lysine acetyltransferase-specific modification sites from protein sequences
W Deng, C Wang, Y Zhang, Y Xu, S Zhang, Z Liu, Y Xue
Scientific reports 6 (1), 39787, 2016
1072016
WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes
Y Xu, S Zhang, S Lin, Y Guo, W Deng, Y Zhang, Y Xue
Nucleic acids research, gkw1011, 2016
972016
dbPAF: an integrative database of protein phosphorylation in animals and fungi
S Ullah, S Lin, Y Xu, W Deng, L Ma, Y Zhang, Z Liu, Y Xue
Scientific reports 6 (1), 23534, 2016
792016
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations
J Zhou, Y Xu, S Lin, Y Guo, W Deng, Y Zhang, A Guo, Y Xue
Nucleic acids research 46 (D1), D447-D453, 2018
652018
ESPRESSO: robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data
Y Gao, F Wang, R Wang, E Kutschera, Y Xu, S Xie, Y Wang, ...
Science Advances 9 (3), eabq5072, 2023
262023
IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing
Y Pan, JW Phillips, BD Zhang, M Noguchi, E Kutschera, J McLaughlin, ...
Proceedings of the National Academy of Sciences 120 (21), e2221116120, 2023
122023
Longitudinal large-scale semiquantitative proteomic data stability across multiple instrument platforms
C Lu, T Glisovic-Aplenc, KM Bernt, K Nestler, J Cesare, L Cao, H Lee, ...
Journal of Proteome Research 20 (11), 5203-5211, 2021
32021
TEQUILA-seq: a versatile and low-cost method for targeted long-read RNA sequencing
F Wang, Y Xu, R Wang, B Zhang, N Smith, A Notaro, S Gaerlan, ...
Nature Communications 14 (1), 4760, 2023
22023
Proteotranscriptomic Strategy to Discover Acute Myeloid Leukemia Immunotherapy Targets
L Cao, Y Xu, T Glisovic-Aplenc, K Nestler, S Gill, KM Bernt, BA Garcia, ...
Blood 140 (Supplement 1), 3425-3426, 2022
2022
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