| CRISPResso2 provides accurate and rapid genome editing sequence analysis K Clement, H Rees, MC Canver, JM Gehrke, R Farouni, JY Hsu, MA Cole, ... Nature biotechnology 37 (3), 224-226, 2019 | 956 | 2019 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 799 | 2018 |
| Noninvasive assessment of gut function using transcriptional recording sentinel cells F Schmidt, J Zimmermann, T Tanna, R Farouni, T Conway, ... Science 376 (6594), eabm6038, 2022 | 55 | 2022 |
| TAF5L and TAF6L maintain self-renewal of embryonic stem cells via the MYC regulatory network D Seruggia, M Oti, P Tripathi, MC Canver, L LeBlanc, DC Di Giammartino, ... Molecular Cell 74 (6), 1148-1163. e7, 2019 | 38 | 2019 |
| AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing K Clement, R Farouni, DE Bauer, L Pinello Bioinformatics 34 (13), i202-i210, 2018 | 36 | 2018 |
| CRISPR-SURF: discovering regulatory elements by deconvolution of CRISPR tiling screen data JY Hsu, CP Fulco, MA Cole, MC Canver, D Pellin, F Sher, R Farouni, ... Nature Methods 15 (12), 1548-7105, 2018 | 33 | 2018 |
| Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing R Farouni, H Djambazian, LE Ferri, J Ragoussis, HS Najafabadi Nature communications 11 (1), 2704, 2020 | 27 | 2020 |
| Legacy Data Confound Genomics Studies SG Luke Anderson-Trocmé, Rick Farouni, Mathieu Bourgey, Yoichiro Kamatani ... Molecular Biology and Evolution, 2019 | 27* | 2019 |
| Transcriptional reprogramming of skeletal muscle stem cells by the niche environment F Lazure, R Farouni, K Sahinyan, DM Blackburn, A Hernández-Corchado, ... Nature Communications 14 (1), 535, 2023 | 17 | 2023 |
| Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements L Pinello, R Farouni, GC Yuan Bioinformatics 34 (11), 1930-1933, 2018 | 14 | 2018 |
| Transcriptional linkage analysis with in vivo AAV-Perturb-seq AJ Santinha, E Klingler, M Kuhn, R Farouni, S Lagler, G Kalamakis, ... Nature 622 (7982), 367-375, 2023 | 10 | 2023 |
| ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data E Baskin, R Farouni, EA Mathe Bioinformatics 33 (5), 740-742, 2017 | 4 | 2017 |
| A Contemporary Overview of Probabilistic Latent Variable Models R Farouni arXiv preprint arXiv:1706.08137, 2017 | 2 | 2017 |
| Latent variable models of categorical responses in the Bayesian and frequentist frameworks T Farouni The Ohio State University, 2014 | 1 | 2014 |
| Abstract PR005: An atlas of cellular heterogeneity in primary and metastatic renal cell carcinomas A Madrigal, M Kim, A Osakwe, T Lu, Z Mehrjoo, E Moslemi, R Farouni, ... Cancer Research 83 (16_Supplement), PR005-PR005, 2023 | | 2023 |
| An Overview of Probabilistic Latent Variable Models with an Application to the Deep Unsupervised Learning of Chromatin States T Farouni The Ohio State University, 2017 | | 2017 |
Luca PinelloAssociate Professor, MGH/Harvard Medical School/BROAD InstituteVerified email at mgh.harvard.edu
