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Zhi Yue
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Year
Assessing lysine and cysteine reactivities for designing targeted covalent kinase inhibitors
R Liu, Z Yue, CC Tsai, J Shen
Journal of the American Chemical Society 141 (16), 6553-6560, 2019
882019
Introducing titratable water to all-atom molecular dynamics at constant pH
W Chen, JA Wallace, Z Yue, JK Shen
Biophysical journal 105 (4), L15-L17, 2013
802013
Dynamic Protonation Dramatically Affects the Membrane Permeability of Drug-like Molecules
Z Yue, C Li, GA Voth, JMJ Swanson
Journal of the American Chemical Society 141 (34), 13421-13433, 2019
602019
Constant pH molecular dynamics reveals how proton release drives the conformational transition of a transmembrane efflux pump
Z Yue, W Chen, HI Zgurskaya, J Shen
Journal of chemical theory and computation 13 (12), 6405-6414, 2017
502017
Predicting catalytic proton donors and nucleophiles in enzymes: How adding dynamics helps elucidate the structure–function relationships
Y Huang, Z Yue, CC Tsai, JA Henderson, J Shen
The journal of physical chemistry letters 9 (6), 1179-1184, 2018
362018
Biomacromolecular affinity: Interactions between lysozyme and regioselectively sulfated chitosan
L Yuan, Z Yue, H Chen, H Huang, T Zhao
Colloids and Surfaces B: Biointerfaces 73 (2), 346-350, 2009
352009
How Electrostatic Coupling Enables Conformational Plasticity in a Tyrosine Kinase
CC Tsai, Z Yue, J Shen
Journal of the American Chemical Society 141 (38), 15092-15101, 2019
302019
Ligand-induced allostery in the interaction of the Pseudomonas aeruginosa heme binding protein with heme oxygenase
DJ Deredge, W Huang, C Hui, H Matsumura, Z Yue, P Moënne-Loccoz, ...
Proceedings of the National Academy of Sciences 114 (13), 3421-3426, 2017
272017
Multiscale Simulation Reveals Passive Proton Transport Through SERCA on the Microsecond Timescale
C Li, Z Yue, LM Espinoza-Fonseca, GA Voth
Biophysical Journal 119 (5), 1033-1040, 2020
152020
Ion permeation, selectivity, and electronic polarization in fluoride channels
Z Yue, Z Wang, GA Voth
Biophysical Journal 121 (7), 1336-1347, 2022
142022
pH-Dependent cooperativity and existence of a dry molten globule in the folding of a miniprotein BBL
Z Yue, J Shen
Physical Chemistry Chemical Physics 20 (5), 3523-3530, 2018
102018
Proton Coupling and the Multiscale Kinetic Mechanism of a Peptide Transporter
C Li, Z Yue, S Newstead, GA Voth
Biophysical Journal 121 (12), 2266-2278, 2022
92022
Toward a Multipathway Perspective: pH-Dependent Kinetic Selection of Competing Pathways and the Role of the Internal Glutamate in Cl–/H+ Antiporters
Z Yue, A Bernardi, C Li, AV Mironenko, JMJ Swanson
The Journal of Physical Chemistry B 125 (29), 7975-7984, 2021
62021
High‐mechanical‐strength ferrohydrogels with a magnetically dispersed phase as multifunctional crosslinkers
Y Zhu, Z Wu, H Lu, Z Yue
Journal of Applied Polymer Science 132 (22), 41950, 2015
22015
Molecular dynamics simulation of complex reactivity with the Rapid Approach for Proton Transport and Other Reactions (RAPTOR) soft-ware package
S Kaiser, Z Yue, Y Peng, T Nguyen, S Chen, D Teng, G Voth
12024
The role of conformational change and key glutamic acid residues in the ClC-ec1 antiporter
Z Yue, C Li, GA Voth
Biophysical Journal 122 (6), 1068-1085, 2023
12023
导电高聚物在生物传感器中的应用
乐知, 吴仲岿, 陈红
材料导报: 网络版, 33-37, 2006
12006
Integrating Dynamic Ionization into Membrane Permeation Free Energy Landscapes and Macroscopic Permeability Calculations
Z Yue, JMJ Swanson
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, COMP-0024, 2019
2019
Unbiased kinase DFG-flip revealed by continuous constant pH molecular dynamics
CC Tsai, Z Yue, J Shen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, COMP-0621, 2019
2019
Exploring Protein Dynamics and Folding with Constant pH Molecular Dynamics Simulations
Z Yue
University of Maryland, Baltimore, 2017
2017
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Articles 1–20