| Multi-omics of the Gut Microbial Ecosystem in Inflammatory Bowel Diseases J Lloyd-Price, C Arze, AN Ananthakrishnan, M Schirmer, J Avila-Pacheco, ... Nature 569 (7758), 655-662, 2019 | 1907 | 2019 |
| Gut Microbiome Structure and Metabolic Activity in Inflammatory Bowel Disease EA Franzosa*, A Sirota-Madi*, J Avila-Pacheco, N Fornelos, HJ Haiser, ... Nature Microbiology 4 (2), 293-305, 2019 | 1297 | 2019 |
| Multivariable Association Discovery in Population-scale Meta-omics Studies H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ... PLoS Computational Biology 17 (11), e1009442, 2021 | 940 | 2021 |
| Global Chemical Effects of the Microbiome Include New Bile-Acid Conjugations RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ... Nature 579 (7797), 123-129, 2020 | 368 | 2020 |
| Stability of the Human Faecal Microbiome in A Cohort of Adult Men RS Mehta*, GS Abu-Ali*, DA Drew, J Lloyd-Price, A Subramanian, ... Nature Microbiology 3 (3), 347-355, 2018 | 234 | 2018 |
| Predictive Metabolomic Profiling of Microbial Communities using Amplicon or Metagenomic Sequences H Mallick, EA Franzosa, LJ Mclver, S Banerjee, A Sirota-Madi, AD Kostic, ... Nature Communications 10 (1), 3136-3146, 2019 | 202 | 2019 |
| Metatranscriptome of Human Faecal Microbial Communities in A Cohort of Adult Men GS Abu-Ali*, RS Mehta*, J Lloyd-Price, H Mallick, T Branck, KL Ivey, ... Nature Microbiology 3 (3), 356-366, 2018 | 191 | 2018 |
| Experimental Design and Quantitative Analysis of Microbial Community Multiomics H Mallick*, S Ma*, EA Franzosa, T Vatanen, XC Morgan, C Huttenhower Genome Biology 18 (1), 228, 2017 | 173 | 2017 |
| Negative Binomial Mixed Models for Analyzing Microbiome Count Data X Zhang, H Mallick, Z Tang, L Zhang, X Cui, AK Benson, N Yi BMC Bioinformatics 18 (1), 4, 2017 | 158 | 2017 |
| Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men LH Nguyen, W Ma, DD Wang, Y Cao, H Mallick, TK Gerbaba, ... Gastroenterology 158 (5), 1313-1325, 2020 | 111 | 2020 |
| Oronasopharyngeal Suction Versus Wiping of the Mouth and Nose at Birth: A Randomised Equivalency Trial J Kelleher, R Bhat, AA Salas, D Addis, EC Mills, H Mallick, A Tripathi, ... The Lancet 382 (9889), 326-330, 2013 | 87 | 2013 |
| Clinical Trial Designs Incorporating Predictive Biomarkers LA Renfro, H Mallick, MW An, DJ Sargent, SJ Mandrekar Cancer Treatment Reviews 43, 74-82, 2016 | 79 | 2016 |
| A New Bayesian LASSO H Mallick, N Yi Statistics and its interface 7 (4), 571-582, 2014 | 72 | 2014 |
| Bayesian Methods for High Dimensional Linear Models H Mallick, N Yi Journal of Biometrics and Biostatistics, S1:005, 2013 | 59 | 2013 |
| Population Structure Discovery in Meta-analyzed Microbial Communities and Inflammation Bowel Disease using MMUPHin S Ma, D Shungin, H Mallick, M Schirmer, LH Nguyen, R Kolde, ... Genome Biology 23 (1), 208, 2022 | 58* | 2022 |
| A Statistical Model for Describing and Simulating Microbial Community Profiles S Ma, B Ren, H Mallick, YS Moon, E Schwager, S Maharjan, TL Tickle, ... PLoS Computational Biology 17 (9), e1008913, 2021 | 48* | 2021 |
| A Bayesian Method for Detecting Pairwise Associations in Compositional Data E Schwager, H Mallick, S Ventz, C Huttenhower PLoS Computational Biology 13 (11), e1005852, 2017 | 46 | 2017 |
| Zero-inflated Negative Binomial Regression for Differential Abundance Testing in Microbiome Studies X Zhang*, H Mallick*, N Yi Journal of Bioinformatics and Genomics 2 (2), 2016 | 38 | 2016 |
| Mortality and Intestinal Failure in Surgical Necrotizing Enterocolitis J Kelleher, H Mallick, TD Soltau, CM Harmon, RA Dimmitt Journal of Pediatric Surgery 48 (3), 568-572, 2013 | 31 | 2013 |
| Bayesian Bridge Regression H Mallick, N Yi Journal of Applied Statistics 45 (6), 988-1008, 2018 | 30 | 2018 |
