| Web-based cross-database exploration of molecular pharmacology data from cancer cell lines and patient genomics WC Reinhold, A Luna, F Elloumi, S Varma, D Taniyama, M Mizunuma, ... Cancer Research 84 (6_Supplement), 7175-7175, 2024 | | 2024 |
| Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches A Niarakis, M Ostaszewski, A Mazein, I Kuperstein, M Kutmon, ... Frontiers in Immunology 14, 1282859, 2024 | | 2024 |
| scPerturb: harmonized single-cell perturbation data S Peidli, TD Green, C Shen, T Gross, J Min, S Garda, B Yuan, ... Nature Methods, 1-10, 2024 | 7 | 2024 |
| cyjShiny: A cytoscape. js R Shiny Widget for network visualization and analysis A Luna, O Shah, C Sander, P Shannon Plos one 18 (8), e0285339, 2023 | 1 | 2023 |
| COVIDpro: Database for mining protein dysregulation in patients with COVID-19 F Zhang, A Luna, T Tan, Y Chen, C Sander, T Guo Journal of Proteome Research 22 (9), 2847-2859, 2023 | 3 | 2023 |
| Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets R Sun, W Ge, Y Zhu, A Sayad, A Luna, M Lyu, S Liang, L Tobalina, ... Molecular & Cellular Proteomics 22 (8), 2023 | 3 | 2023 |
| CellMinerCDB: NCATS Is a Web-Based Portal Integrating Public Cancer Cell Line Databases for Pharmacogenomic Explorations WC Reinhold, K Wilson, F Elloumi, KR Bradwell, M Ceribelli, S Varma, ... Cancer research 83 (12), 1941-1952, 2023 | 1 | 2023 |
| Mapping the functional interactions at the tumor-immune checkpoint interface B Bozorgui, EK Kong, A Luna, A Korkut Communications Biology 6 (1), 462, 2023 | 6 | 2023 |
| StonPy: a tool to parse and query collections of SBGN maps in a graph database A Rougny, I Balaur, A Luna, A Mazein Bioinformatics 39 (3), btad100, 2023 | 3 | 2023 |
| A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms A Niarakis, M Ostaszewski, A Mazein, I Kuperstein, M Kutmon, ... bioRxiv, 2022.12. 17.520865, 2022 | 1 | 2022 |
| scperturb: Information resource for harmonized single-cell perturbation data TD Green, S Peidli, C Shen, T Gross, J Min, S Garda, JP Taylor-King, ... NeurIPS 2022 Workshop on Learning Meaningful Representations of Life, 2022 | 4 | 2022 |
| Exploring causal relationships in proteomic profiles in Cytoscape using the CausalPath App P Saha, Ö Babur, C Sander, A Luna F1000Research 11, 458, 2022 | | 2022 |
| BET inhibition induces vulnerability to MCL1 targeting through upregulation of fatty acid synthesis pathway in breast cancer G Yan, A Luna, H Wang, B Bozorgui, X Li, M Sanchez, Z Dereli, ... Cell reports 40 (11), 2022 | 2 | 2022 |
| Targeting adaptation to cancer treatment by drug combinations H Wang, A Luna, G Yan, X Li, O Babur, C Sander, G Mills Cancer Research 82 (12_Supplement), 1002-1002, 2022 | | 2022 |
| Abstract LB119: Precision combination therapies based on recurrent oncogenic co-alterations A Korkut, X Li, E Kong, G Yan, Z Dereli, B Bozorgui, P Imanirad, ... Cancer Research 82 (12_Supplement), LB119-LB119, 2022 | | 2022 |
| Proteomic Dynamics of Breast Cancers Identifies Potential Therapeutic Protein Targets R Sun, Y Zhu, A Sayad, W Ge, A Luna, S Liang, LT Segura, ... bioRxiv, 2022.06. 03.494776, 2022 | | 2022 |
| Precision combination therapies based on recurrent oncogenic coalterations X Li, EK Dowling, G Yan, Z Dereli, B Bozorgui, P Imanirad, JH Elnaggar, ... Cancer discovery 12 (6), 1542-1559, 2022 | 17 | 2022 |
| scPerturb: Information resource for harmonized single-cell perturbation data S Peidli, TD Green, C Shen, T Gross, J Min, J Taylor-King, D Marks, ... bioRxiv, 2022 | 5 | 2022 |
| COVIDpro: Database for mining protein dysregulation in patients with COVID-19 (preprint) F Zhang, A Luna, T Tan, Y Chen, C Sander, T Guo | | 2022 |
| Analyzing causal relationships in proteomic profiles using CausalPath A Luna, MC Siper, A Korkut, F Durupinar, U Dogrusoz, JE Aslan, ... STAR protocols 2 (4), 100955, 2021 | 5 | 2021 |
