| Gene set analysis: challenges, opportunities, and future research F Maleki, K Ovens, DJ Hogan, AJ Kusalik Frontiers in genetics 11, 531777, 2020 | 164 | 2020 |
| Brief history of artificial intelligence N Muthukrishnan, F Maleki, K Ovens, C Reinhold, B Forghani, R Forghani Neuroimaging Clinics of North America 30 (4), 393-399, 2020 | 114 | 2020 |
| Machine learning algorithm validation: from essentials to advanced applications and implications for regulatory certification and deployment F Maleki, N Muthukrishnan, K Ovens, C Reinhold, R Forghani Neuroimaging Clinics 30 (4), 433-445, 2020 | 96 | 2020 |
| Size matters: how sample size affects the reproducibility and specificity of gene set analysis F Maleki, K Ovens, I McQuillan, AJ Kusalik Human genomics 13, 1-12, 2019 | 52 | 2019 |
| How useful are delta checks in the 21st century? A stochastic-dynamic model of specimen mix-up and detection K Ovens, C Naugler Journal of Pathology Informatics 3 (1), 5, 2012 | 52 | 2012 |
| Overview of machine learning part 1: fundamentals and classic approaches F Maleki, K Ovens, K Najafian, B Forghani, C Reinhold, R Forghani Neuroimaging Clinics 30 (4), e17-e32, 2020 | 49 | 2020 |
| Comparative analyses of gene co-expression networks: Implementations and applications in the study of evolution K Ovens, BF Eames, I McQuillan Frontiers in Genetics 12, 695399, 2021 | 36 | 2021 |
| Generalizability of machine learning models: Quantitative evaluation of three methodological pitfalls F Maleki, K Ovens, R Gupta, C Reinhold, A Spatz, R Forghani Radiology: Artificial Intelligence 5 (1), e220028, 2022 | 24 | 2022 |
| Preliminary evidence of different selection pressures on cancer cells as compared to normal tissues K Ovens, C Naugler Theoretical Biology and Medical Modelling 9, 1-11, 2012 | 19 | 2012 |
| Measuring consistency among gene set analysis methods: a systematic study F Maleki, KL Ovens, DJ Hogan, E Rezaei, AM Rosenberg, AJ Kusalik Journal of bioinformatics and computational biology 17 (05), 1940010, 2019 | 16 | 2019 |
| Juxtapose: a gene-embedding approach for comparing co-expression networks K Ovens, F Maleki, BF Eames, I McQuillan BMC bioinformatics 22, 1-26, 2021 | 13 | 2021 |
| Site-specific variation in radiomic features of head and neck squamous cell carcinoma and its impact on machine learning models X Liu, F Maleki, N Muthukrishnan, K Ovens, SH Huang, A Pérez-Lara, ... Cancers 13 (15), 3723, 2021 | 9 | 2021 |
| Gene set databases: a fountain of knowledge or a siren call? F Maleki, K Ovens, I McQuillan, E Rezaei, AM Rosenberg, AJ Kusalik Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019 | 9 | 2019 |
| The impact of sample size and tissue type on the reproducibility of gene co-expression networks K Ovens, BF Eames, I McQuillan Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020 | 7 | 2020 |
| Method Choice in Gene Set Analysis Has Important Consequences for Analysis Outcome. F Maleki, KL Ovens, E Rezaei, AM Rosenberg, AJ Kusalik BIOINFORMATICS, 43-54, 2019 | 5 | 2019 |
| Gene set analysis: Challenges, opportunities, and future research. Front Genet. 2020; 11: 654 F Maleki, K Ovens, DJ Hogan, AJ Kusalik | 4 | 2020 |
| Limb mesoderm and head ectomesenchyme both express a core transcriptional program during chondrocyte differentiation P Gomez-Picos, K Ovens, BF Eames Frontiers in Cell and Developmental Biology 10, 876825, 2022 | 3 | 2022 |
| A deep learning-based pipeline for celiac disease diagnosis using histopathological images F Maleki, K Cote, K Najafian, K Ovens, Y Miao, R Zakarian, C Reinhold, ... Computer Analysis of Images and Patterns: 19th International Conference …, 2021 | 3 | 2021 |
| pineplot: an R package for visualizing symmetric relationships KL Ovens, DJ Hogan, F Maleki, I McQuillan, AJ Kusalik Proceedings of the tenth international conference on computational systems …, 2019 | 3 | 2019 |
| Proteoglycan inhibition of canonical BMP-dependent cartilage maturation delays endochondral ossification E Koosha, CTA Brenna, AM Ashique, N Jain, K Ovens, T Koike, ... Development 151 (2), 2024 | 1 | 2024 |
Farhad MalekiAssistant Professor, University of CalgaryVerified email at ucalgary.ca
