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sushant kumar
sushant kumar
Verified email at utoronto.ca - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
14842020
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, T Kawli, CA Davis, A Dobin, R Kaul, J Halow, ...
Nature 583 (7818), 699-710, 2020
11362020
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
7432019
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
4972020
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science, 2021
4152021
High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ...
bioRxiv, 2021
4082021
Insights into genetics, human biology and disease gleaned from family based genomic studies
JE Posey, AH O’Donnell-Luria, JX Chong, T Harel, SN Jhangiani, ...
Genetics in Medicine 21 (4), 798-812, 2019
1852019
Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
Cell, 2020
1142020
Reliability of Whole-Exome Sequencing for Assessing Intratumor Genetic Heterogeneity
CH Weiwei Shi, Charlotte K.Y. Ng, Raymond S. Lim,Tingting Jiang, Sushant ...
Cell Reports 25, 1446-1457, 2018
942018
Identifying allosteric hotspots with dynamics: Application to inter-and intra-species conservation
D Clarke, A Sethi, S Li, S Kumar, RWF Chang, J Chen, M Gerstein
Structure 24 (5), 826-837, 2016
562016
Centers for Mendelian Genomics: A decade of facilitating gene discovery
SM Baxter, JE Posey, NJ Lake, N Sobreira, JX Chong, S Buyske, EE Blue, ...
Genetics in Medicine, 2022
452022
Network analysis as a grand unifier in biomedical data science
P McGillivray, D Clarke, W Meyerson, J Zhang, D Lee, M Gu, S Kumar, ...
Annual Review of Biomedical Data Science 1, 153-180, 2018
432018
FAVOR: functional annotation of variants online resource and annotator for variation across the human genome
H Zhou, T Arapoglou, X Li, Z Li, X Zheng, J Moore, A Asok, S Kumar, ...
Nucleic Acids Research 51 (D1), D1300-D1311, 2023
402023
Germline determinants of the somatic mutation landscape in 2,642 cancer genomes
SM Waszak, G Tiao, B Zhu, T Rausch, F Muyas, B Rodríguez-Martín, ...
bioRxiv, 2017
342017
Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures
S Kumar, D Clarke, MB Gerstein
Proceedings of the National Academy of Sciences 116 (38), 18962-18970, 2019
312019
SVFX: a machine-learning framework to quantify the pathogenicity of structural variants
S Kumar, A Harmanci, J Vytheeswaran, MB Gerstein
262019
Atomistic simulations reveal structural disorder in the RAP74-FCP1 complex
C Wostenberg, S Kumar, WG Noid, SA Showalter
The Journal of Physical Chemistry B 115 (46), 13731-13739, 2011
242011
Role of ordered proteins in the folding-upon-binding of intrinsically disordered proteins
CW Lawrence, S Kumar, WG Noid, SA Showalter
The journal of physical chemistry letters 5 (5), 833-838, 2014
232014
Localized structural frustration for evaluating the impact of sequence variants
S Kumar, D Clarke, M Gerstein
Nucleic acids research 44 (21), gkw927, 2013
192013
Cancer genomics: Less is more in the hunt for driver mutations
S Kumar, M Gerstein
Nature 547 (7661), 40-41, 2017
182017
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Articles 1–20