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Simone Pompei
Simone Pompei
IFOM the FIRC Institute of Molecular Oncology
Verified email at ifom.eu
Title
Cited by
Cited by
Year
Predictive modeling of influenza shows the promise of applied evolutionary biology
DH Morris, KM Gostic, S Pompei, T Bedford, M Łuksza, RA Neher, ...
Trends in microbiology 26 (2), 102-118, 2018
1182018
On the accuracy of language trees
S Pompei, V Loreto, F Tria
PloS one 6 (6), e20109, 2011
722011
Adaptive evolution of hybrid bacteria by horizontal gene transfer
JJ Power, F Pinheiro, S Pompei, V Kovacova, M Yüksel, I Rathmann, ...
Proceedings of the national Academy of Sciences 118 (10), e2007873118, 2021
382021
Phylogenetic properties of RNA viruses
S Pompei, V Loreto, F Tria
Public Library of Science 7 (9), e44849, 2012
362012
Dynamically correlated mutations drive human Influenza A evolution
F Tria, S Pompei, V Loreto
Scientific reports 3 (1), 2705, 2013
232013
A modified fluctuation-test framework characterizes the population dynamics and mutation rate of colorectal cancer persister cells
M Russo, S Pompei, A Sogari, M Corigliano, G Crisafulli, A Puliafito, ...
Nature Genetics 54 (7), 976-984, 2022
212022
Epistasis, aneuploidy, and functional mutations underlie evolution of resistance to induced microtubule depolymerization
M Pavani, P Bonaiuti, E Chiroli, F Gross, F Natali, F Macaluso, Á Póti, ...
The EMBO Journal 40 (22), e108225, 2021
132021
A fitness trade-off explains the early fate of yeast aneuploids with chromosome gains
S Pompei, M Cosentino Lagomarsino
Proceedings of the National Academy of Sciences 120 (15), e2211687120, 2023
52023
Distance-based phylogenetic algorithms: new insights and applications
S Pompei, E Caglioti, V Loreto, F Tria
Mathematical Models and Methods in Applied Sciences 20 (supp01), 1511-1532, 2010
52010
A fast noise reduction driven distance-based phylogenetic algorithm
F Tria, E Caglioti, V Loreto, S Pompei
Proceedings of BIOCOMP 2010 (2010), 375-380, 2010
42010
Clonal cooperation through soluble metabolite exchange facilitates metastatic outgrowth by modulating Allee effect
BJ Hershey, S Barozzi, F Orsenigo, S Pompei, F Iannelli, S Kamrad, ...
Science Advances 9 (37), eadh4184, 2023
22023
Metacommunity structure preserves genome diversity in the presence of gene-specific selective sweeps under moderate rates of horizontal gene transfer
S Pompei, E Bella, JS Weitz, J Grilli, MC Lagomarsino
PLOS Computational Biology 19 (10), e1011532, 2023
12023
Adaptive ratchets and the evolution of molecular complexity
T Röschinger, RM Tovar, S Pompei, M Lässig
arXiv preprint arXiv:2111.09981, 2021
12021
Drug-induced colorectal cancer persister cells show increased mutation rate
M Russo, S Pompei, A Sogari, M Corigliano, G Crisafulli, A Bertotti, ...
bioRxiv, 2021.05. 17.444478, 2021
12021
Heterogeneity and evolution of DNA mutation rates in microsatellite stable colorectal cancer
E Grassi, V Vurchio, GD Cresswell, I Catalano, B Lupo, F Sassi, F Galimi, ...
bioRxiv, 2024.02. 26.582054, 2024
2024
Metacommunity Structure Preserves Genome Diversity in the Presence of Gene-specific Selective Sweeps
S Pompei, E Bella, JS Weitz, J Grilli, MC Lagomarsino
bioRxiv, 2023.01. 17.524383, 2023
2023
A modified Luria-Delbrück assay allows quantification of colorectal cancer persister cells’ mutation rate
A Sogari, M Russo, S Pompei, M Corigliano, G Crisafulli, A Bertotti, ...
Cancer Research 82 (12_Supplement), 2613-2613, 2022
2022
Copystree: Gaming artificial phylogenies
S Pompei, V Loreto, F Tria
Language Dynamics and Change 8 (1), 55-77, 2018
2018
Exploring the evolution of pathogens organised in discrete antigenic clusters
M Pugliese, V Loreto, S Pompei, F Tria
Journal of Statistical Mechanics: Theory and Experiment 2016 (9), 093306, 2016
2016
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Articles 1–19