| AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides TH Olsen, B Yesiltas, FI Marin, M Pertseva, PJ García-Moreno, ... Scientific reports 10 (1), 21471, 2020 | 91 | 2020 |
| Toward mechanistic models for genotype–phenotype correlations in phenylketonuria using protein stability calculations R Scheller, A Stein, SV Nielsen, FI Marin, AM Gerdes, M Di Marco, ... Human mutation 40 (4), 444-457, 2019 | 55 | 2019 |
| Strategy to prevent epitope masking in CAR. CD19+ B-cell leukemia blasts C Quintarelli, M Guercio, S Manni, I Boffa, M Sinibaldi, S Di Cecca, ... Journal for Immunotherapy of Cancer 9 (6), 2021 | 13 | 2021 |
| T cell receptor sequence clustering and antigen specificity M Vujovic, KF Degn, FI Marin, AL Schaap-Johansen, B Chain, ... Computational and Structural Biotechnology Journal 18, 2166-2173, 2020 | 12 | 2020 |
| Hartmann-680 Petersen R. Toward mechanistic models for genotype–phenotype correlations in phenylketonuria using pro-681 tein stability calculations R Scheller, A Stein, SV Nielsen, FI Marin, AM Gerdes, M Di Marco, ... Human Mutation 40 (4), 444-457, 2019 | 5 | 2019 |
| BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks FI Marin, F Teufel, M Horlacher, D Madsen, D Pultz, O Winther, ... The Twelfth International Conference on Learning Representations, 2023 | 4 | 2023 |
| Computational and experimental assessment of backbone templates for computational redesign of the thioredoxin fold FI Marin, KE Johansson, C O’Shea, K Lindorff-Larsen, JR Winther The journal of physical chemistry B 125 (40), 11141-11149, 2021 | 4 | 2021 |
| Design of a Protein with Improved Thermal Stability by an Evolution‐Based Generative Model P Tian, A Lemaire, F Sénéchal, O Habrylo, V Antonietti, P Sonnet, ... Angewandte Chemie 134 (50), e202202711, 2022 | 2 | 2022 |
| BEND: Benchmarking DNA Language Models on biologically meaningful tasks F Isa Marin, F Teufel, M Horlacher, D Madsen, D Pultz, O Winther, ... arXiv e-prints, arXiv: 2311.12570, 2023 | | 2023 |
| Computational Modeling of Antibody and T-Cell Receptor (CDR3 Loops) FI Marin, P Marcatili Computer-Aided Antibody Design, 83-100, 2022 | | 2022 |
| Gene finding revisited: improved robustness through structured decoding from learning embeddings FI Marin, D Pultz, W Boomsma | | 2022 |
| Computational and experimental assessment of backbone templates for computational protein design FI Marin, KE Johansson, C O’Shea, K Lindorff-Larsen, JR Winther bioRxiv, 2021.06. 23.449573, 2021 | | 2021 |
