| DGIdb 3.0: a redesign and expansion of the drug–gene interaction database KC Cotto, AH Wagner, YY Feng, S Kiwala, AC Coffman, G Spies, ... Nucleic acids research 46 (D1), D1068-D1073, 2018 | 758 | 2018 |
| Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts SL Freshour, S Kiwala, KC Cotto, AC Coffman, JF McMichael, JJ Song, ... Nucleic acids research 49 (D1), D1144-D1151, 2021 | 550 | 2021 |
| pVACtools: a computational toolkit to identify and visualize cancer neoantigens J Hundal, S Kiwala, J McMichael, CA Miller, H Xia, AT Wollam, CJ Liu, ... Cancer immunology research 8 (3), 409-420, 2020 | 155 | 2020 |
| Bam-readcount-rapid generation of basepair-resolution sequence metrics A Khanna, DE Larson, SN Srivatsan, M Mosior, TE Abbott, S Kiwala, ... ArXiv, 2021 | 47 | 2021 |
| Accounting for proximal variants improves neoantigen prediction J Hundal, S Kiwala, YY Feng, CJ Liu, R Govindan, WC Chapman, ... Nature genetics 51 (1), 175-179, 2019 | 40 | 2019 |
| Cancer immunogenomics: computational neoantigen identification and vaccine design J Hundal, CA Miller, M Griffith, OL Griffith, J Walker, S Kiwala, A Graubert, ... Cold Spring Harbor symposia on quantitative biology 81, 105-111, 2016 | 28 | 2016 |
| Standard operating procedure for curation and clinical interpretation of variants in cancer AM Danos, K Krysiak, EK Barnell, AC Coffman, JF McMichael, S Kiwala, ... Genome medicine 11, 1-12, 2019 | 17 | 2019 |
| Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community‐driven standards AM Danos, DI Ritter, AH Wagner, K Krysiak, D Sonkin, C Micheel, ... Human mutation 39 (11), 1721-1732, 2018 | 14 | 2018 |
| CIViCpy: a python software development and analysis toolkit for the CIViC knowledgebase AH Wagner, S Kiwala, AC Coffman, JF McMichael, KC Cotto, TB Mooney, ... JCO Clinical Cancer Informatics 4, 245-253, 2020 | 12 | 2020 |
| Computational prediction of MHC anchor locations guides neoantigen identification and prioritization H Xia, J McMichael, M Becker-Hapak, OC Onyeador, R Buchli, E McClain, ... Science immunology 8 (82), eabg2200, 2023 | 11 | 2023 |
| CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase K Krysiak, AM Danos, J Saliba, JF McMichael, AC Coffman, S Kiwala, ... Nucleic acids research 51 (D1), D1230-D1241, 2023 | 11 | 2023 |
| DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms M Cannon, J Stevenson, K Stahl, R Basu, A Coffman, S Kiwala, ... Nucleic Acids Research 52 (D1), D1227-D1235, 2024 | 10 | 2024 |
| A community approach to the cancer-variant-interpretation bottleneck K Krysiak, AM Danos, S Kiwala, JF McMichael, AC Coffman, EK Barnell, ... Nature cancer 3 (5), 522-525, 2022 | 3 | 2022 |
| Neoantigen Landscape Supports Feasibility of Personalized Cancer Vaccine for Follicular Lymphoma CA Ramirez, F Frenkel, M Becker-Hapak, EK Barnell, ED McClain, ... medRxiv, 2022.01. 06.22268805, 2022 | 1 | 2022 |
| Identification of predicted neoantigen vaccine candidates in follicular lymphoma patients. C Ramirez, F Frenkel, O Plotnikova, V Belousov, A Bagaev, E Ocheredko, ... Journal of Clinical Oncology 38 (15_suppl), 8054-8054, 2020 | 1 | 2020 |
| Integration of whole exome and RNA sequencing identifies neoepitope vaccine candidates in> 90 percent of follicular lymphoma patients C Ramirez, K Krysiak, F Gomez, S Kiwala, CA Miller, K Campbell, ... Blood 130, 114, 2017 | 1 | 2017 |
| P085: Addition of new variant classes to the CIViC data model A Danos, K Krysiak, J Saliba, A Coffman, S Kiwala, J McMichael, ... Genetics in Medicine Open 2, 2024 | | 2024 |
| Normalization of drug and therapeutic concepts with Thera-Py M Cannon, J Stevenson, K Kuzma, S Kiwala, JL Warner, OL Griffith, ... JAMIA open 6 (4), ooad093, 2023 | | 2023 |
| 35. Evolution of a variant curation procedures in the open-access cancer variant interpretation knowledgebase CIViC K Krysiak, A Danos, J Saliba, S Kiwala, A Coffman, J McMichael, ... Cancer Genetics 278, 11, 2023 | | 2023 |
| 26. Improving interoperability of therapeutics and their targets for clinical and precision medicine applications M Cannon, J Stevenson, K Stahl, A Coffman, S Kiwala, J McMichael, ... Cancer Genetics 278, 8-9, 2023 | | 2023 |
