Pavel Baranov, "Pasha"

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John F. AtkinsResearch Professor, University College Cork (UCC), IrelandVerified email at genetics.utah.edu
Audrey MichelUniversity College CorkVerified email at ucc.ie
g loughranVerified email at ucc.ie
Andrew E FirthUniversity of CambridgeVerified email at cam.ac.uk
Ivaylo P IvanovNational Institutes of Health, Bethesda, MDVerified email at nih.gov
Anmol KiranUniversity of Liverpool, Malawi-Liverpool-Wellcome Trust Clinical Research ProgrammeVerified email at liv.ac.uk
PapkovskyProfessor of Biochemistry, University College CorkVerified email at ucc.ie
Martina Yordanovauniversity college corkVerified email at umail.ucc.ie
Vadim GladyshevProfessor of Medicine, Brigham and Women's Hospital, Harvard Medical SchoolVerified email at rics.bwh.harvard.edu
Alexander V. ZhdanovUniversity College CorkVerified email at ucc.ie
Stephen HeaphyComputational Biology, University College CorkVerified email at umail.ucc.ie
Olivier FayetCNRSVerified email at ibcg.biotoul.fr
Virag SharmaUniversity of LimerickVerified email at ul.ie
James P A MullanVerified email at ucc.ie
Sergey DmitrievBelozersky Institute of Physico-Chemical Biology, Moscow State UniversityVerified email at belozersky.msu.ru
Ivan V. AntonovResearch Centre of Biotechnology RAS, Moscow, RussiaVerified email at gatech.edu
Mark BorodovskyRegents' Professor, Georgia TechVerified email at gatech.edu
Romika KumariPostdoctoral researcher, Institute for Molecular Medicine FinlandVerified email at helsinki.fi
alexey bogdanovНИИФХБ им. А.Н.Белозерского МГУVerified email at belozersky.msu.ru
Michaël BekaertInstitute of Aquaculture, University of StirlingVerified email at stir.ac.uk

Pavel Baranov, "Pasha"

Professor of Biomolecular Informatics, University College Cork, Ireland

Verified email at ucc.ie - Homepage

mRNA translation Genetic Code Ribosome profiling


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Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression DE Andreev, PBF O'Connor, C Fahey, EM Kenny, IM Terenin, SE Dmitriev, ... elife 4, e03971, 2015	357	2015
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use JF Atkins, G Loughran, PR Bhatt, AE Firth, PV Baranov Nucleic acids research 44 (15), 7007-7078, 2016	320	2016
Programmed ribosomal frameshifting in decoding the SARS-CoV genome PV Baranov, CM Henderson, CB Anderson, RF Gesteland, JF Atkins, ... Virology 332 (2), 498-510, 2005	277	2005
Recoding: translational bifurcations in gene expression PV Baranov, RF Gesteland, JF Atkins Gene 286 (2), 187-201, 2002	263	2002
DARNED: a DAtabase of RNa EDiting in humans A Kiran, PV Baranov Bioinformatics 26 (14), 1772-1776, 2010	261	2010
Evidence of efficient stop codon readthrough in four mammalian genes G Loughran, MY Chou, IP Ivanov, I Jungreis, M Kellis, AM Kiran, ... Nucleic acids research 42 (14), 8928-8938, 2014	250	2014
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences IP Ivanov, AE Firth, AM Michel, JF Atkins, PV Baranov Nucleic acids research 39 (10), 4220-4234, 2011	248	2011
GWIPS-viz: development of a ribo-seq genome browser AM Michel, G Fox, A M. Kiran, C De Bo, PBF O’Connor, SM Heaphy, ... Nucleic acids research 42 (D1), D859-D864, 2014	236	2014
Observation of dually decoded regions of the human genome using ribosome profiling data AM Michel, KR Choudhury, AE Firth, NT Ingolia, JF Atkins, PV Baranov Genome research 22 (11), 2219-2229, 2012	226	2012
Pyrrolysine and selenocysteine use dissimilar decoding strategies Y Zhang, PV Baranov, JF Atkins, VN Gladyshev Journal of Biological Chemistry 280 (21), 20740-20751, 2005	170	2005
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling DE Andreev, PBF O'Connor, G Loughran, SE Dmitriev, PV Baranov, ... Nucleic acids research 45 (2), 513-526, 2017	165	2017
Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov, AE Firth, ... Molecular cell 74 (3), 481-493. e6, 2019	153	2019
Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes DE Andreev, PBF O’Connor, AV Zhdanov, RI Dmitriev, IN Shatsky, ... Genome biology 16, 1-14, 2015	139	2015
Comparative survey of the relative impact of mRNA features on local ribosome profiling read density PBF O’Connor, DE Andreev, PV Baranov Nature communications 7 (1), 12915, 2016	128	2016
Standardized annotation of translated open reading frames JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ... Nature biotechnology 40 (7), 994-999, 2022	122	2022
The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 Å resolution F Mueller, I Sommer, P Baranov, R Matadeen, M Stoldt, J WoÈhnert, ... Journal of molecular biology 298 (1), 35-59, 2000	119	2000
P-site tRNA is a crucial initiator of ribosomal frameshifting PV Baranov, RF Gesteland, JF Atkins Rna 10 (2), 221-230, 2004	113	2004
Release factor 2 frameshifting sites in different bacteria PV Baranov, RF Gesteland, JF Atkins EMBO reports, 2002	112	2002
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum SM Heaphy, M Mariotti, VN Gladyshev, JF Atkins, PV Baranov Molecular biology and evolution 33 (11), 2885-2889, 2016	111	2016
Ribosome profiling: a Hi‐Def monitor for protein synthesis at the genome‐wide scale AM Michel, PV Baranov Wiley Interdisciplinary Reviews: RNA 4 (5), 473-490, 2013	110	2013

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