| Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ... Eurosurveillance 25 (32), 2001410, 2020 | 256 | 2020 |
| The tumor profiler study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer cell 39 (3), 288-293, 2021 | 89 | 2021 |
| Single-cell copy number calling and event history reconstruction J Kuipers, MA Tuncel, P Ferreira, K Jahn, N Beerenwinkel BioRxiv, 2020.04. 28.065755, 2020 | 43 | 2020 |
| Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data SA Nadeau, TG Vaughan, C Beckmann, I Topolsky, C Chen, E Hodcroft, ... Science translational medicine 15 (680), eabn7979, 2022 | 23 | 2022 |
| Within-patient genetic diversity of SARS-CoV-2 J Kuipers, AA Batavia, KP Jablonski, F Bayer, N Borgsmüller, A Dondi, ... BioRxiv, 2020 | 22 | 2020 |
| Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data S Nadeau, C Beckmann, I Topolsky, T Vaughan, E Hodcroft, T Schär, ... medRxiv, 2020.10. 14.20212621, 2020 | 12 | 2020 |
| Scalable probabilistic matrix factorization for single-cell RNA-seq analysis PF Ferreira, AM Carvalho, S Vinga bioRxiv, 496810, 2018 | 5 | 2018 |
| Mapping single-cell transcriptomes to copy number evolutionary trees PF Ferreira, J Kuipers, N Beerenwinkel International Conference on Research in Computational Molecular Biology, 380-381, 2022 | 3 | 2022 |
| Variational inference in probabilistic single-cell rna-seq models PF Ferreira, AM Carvalho, S Vinga International Meeting on Computational Intelligence Methods for …, 2018 | 1 | 2018 |
| Identifying hierarchical cell states and gene signatures with deep exponential families for single-cell transcriptomics PF Ferreira, J Kuipers, N Beerenwinkel bioRxiv, 2022.10. 15.512383, 2024 | | 2024 |
Jack KuipersETH ZurichVerified email at bsse.ethz.ch
