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Mehdi Mirzaie
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A systematic survey of centrality measures for protein-protein interaction networks
M Ashtiani, A Salehzadeh-Yazdi, Z Razaghi-Moghadam, H Hennig, ...
BMC systems biology 12, 1-17, 2018
1702018
Ranked k-medoids: A fast and accurate rank-based partitioning algorithm for clustering large datasets
SMR Zadegan, M Mirzaie, F Sadoughi
Knowledge-Based Systems 39, 133-143, 2013
1082013
A compartmental model that predicts the effect of social distancing and vaccination on controlling COVID-19
M Dashtbali, M Mirzaie
Scientific Reports 11 (1), 8191, 2021
1002021
CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis
M Ashtiani, M Mirzaie, M Jafari
Bioinformatics 35 (8), 1436-1437, 2019
61*2019
Updates on drug–target network; facilitating polypharmacology and data integration by growth of DrugBank database
F Barneh, M Jafari, M Mirzaie
Briefings in bioinformatics 17 (6), 1070-1080, 2016
612016
Quantitative HPLC-based metabolomics of some Iranian saffron (Crocus sativus L.) accessions
M Vahedi, M Kabiri, SA Salami, H Rezadoost, M Mirzaie, MR Kanani
Industrial Crops and Products 118, 26-29, 2018
512018
Protein complex prediction: A survey
J Zahiri, A Emamjomeh, S Bagheri, A Ivazeh, G Mahdevar, HS Tehrani, ...
Genomics 112 (1), 174-183, 2020
492020
Human T‐lymphotropic virus 1 (HTLV‐1) pathogenesis: A systems virology study
SH Mozhgani, M Zarei‐Ghobadi, M Teymoori‐Rad, T Mokhtari‐Azad, ...
Journal of cellular biochemistry 119 (5), 3968-3979, 2018
382018
Signaling network of lipids as a comprehensive scaffold for omics data integration in sputum of COPD patients
SA Jamalkandi, M Mirzaie, M Jafari, H Mehrani, P Shariati, ...
Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2015
352015
Rps27a might act as a controller of microglia activation in triggering neurodegenerative diseases
N Khayer, M Mirzaie, SA Marashi, M Jalessi
Plos one 15 (9), e0239219, 2020
292020
A mathematical model of honey bee colony dynamics to predict the effect of pollen on colony failure
S Bagheri, M Mirzaie
PLoS One 14 (11), e0225632, 2019
262019
Proteomics and traditional medicine: new aspect in explanation of temperaments
M Jafari, H Rezadoost, M Karimi, M Mirzaie, M Rezaie-Tavirani, ...
Research in Complementary and Classical Natural Medicine 21 (4), 250-253, 2014
222014
An insight to HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) pathogenesis; evidence from high-throughput data integration and meta-analysis
SH Mozhgani, M Piran, M Zarei-Ghobadi, M Jafari, SM Jazayeri, ...
Retrovirology 16, 1-11, 2019
212019
Evolutionarily conserved motifs and modules in mitochondrial protein–protein interaction networks
M Jafari, M Sadeghi, M Mirzaie, SA Marashi, M Rezaei-Tavirani
Mitochondrion 13 (6), 668-675, 2013
192013
A distance‐dependent atomic knowledge‐based potential and force for discrimination of native structures from decoys
M Mirzaie, C Eslahchi, H Pezeshk, M Sadeghi
Proteins: Structure, Function, and Bioinformatics 77 (2), 454-463, 2009
192009
Bipartite network models to design combination therapies in acute myeloid leukaemia
M Jafari, M Mirzaie, J Bao, F Barneh, S Zheng, J Eriksson, CA Heckman, ...
Nature communications 13 (1), 2128, 2022
182022
Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer
F Barneh, M Mirzaie, P Nickchi, TZ Tan, JP Thiery, M Piran, M Salimi, ...
Briefings in bioinformatics 20 (2), 717-731, 2019
182019
UNaProd: a universal natural product database for Materia Medica of Iranian traditional medicine
A Naghizadeh, D Hamzeheian, S Akbari, F Mohammadi, T Otoufat, ...
Evidence-based complementary and alternative medicine 2020, 2020
172020
Three-way interaction model to trace the mechanisms involved in Alzheimer’s disease transgenic mice
N Khayer, SA Marashi, M Mirzaie, F Goshadrou
PloS one 12 (9), e0184697, 2017
162017
Valproic acid inhibits the protective effects of stromal cells against chemotherapy in breast cancer: Insights from proteomics and systems biology
F Barneh, M Salimi, F Goshadrou, M Ashtiani, M Mirzaie, H Zali, M Jafari
Journal of cellular biochemistry 119 (11), 9270-9283, 2018
142018
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Articles 1–20