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Jawon Song
Jawon Song
Texas Advanced Computing Center
Verified email at tacc.utexas.edu
Title
Cited by
Cited by
Year
Epigenetic and genetic influences on DNA methylation variation in maize populations
SR Eichten, R Briskine, J Song, Q Li, R Swanson-Wagner, PJ Hermanson, ...
The Plant Cell 25 (8), 2783-2797, 2013
2422013
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ...
Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015
2062015
Genetic perturbation of the maize methylome
Q Li, SR Eichten, PJ Hermanson, VM Zaunbrecher, J Song, J Wendt, ...
The Plant Cell 26 (12), 4602-4616, 2014
1722014
Genomic distribution of H3K9me2 and DNA methylation in a maize genome
PT West, Q Li, L Ji, SR Eichten, J Song, MW Vaughn, RJ Schmitz, ...
PloS one 9 (8), e105267, 2014
1532014
Apyrase suppression raises extracellular ATP levels and induces gene expression and cell wall changes characteristic of stress responses
MH Lim, J Wu, J Yao, IF Gallardo, JW Dugger, LJ Webb, J Huang, ...
Plant Physiology 164 (4), 2054-2067, 2014
762014
Examining the causes and consequences of context-specific differential DNA methylation in maize
Q Li, J Song, PT West, G Zynda, SR Eichten, MW Vaughn, NM Springer
Plant physiology 168 (4), 1262-1274, 2015
692015
Genome-wide analysis of the Arabidopsis replication timing program
L Concia, AM Brooks, E Wheeler, GJ Zynda, EE Wear, C LeBlanc, J Song, ...
Plant physiology 176 (3), 2166-2185, 2018
372018
Subtle perturbations of the maize methylome reveal genes and transposons silenced by chromomethylase or RNA-directed DNA methylation pathways
SN Anderson, GJ Zynda, J Song, Z Han, MW Vaughn, Q Li, NM Springer
G3: Genes, Genomes, Genetics 8 (6), 1921-1932, 2018
302018
Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips
EE Wear, J Song, GJ Zynda, C LeBlanc, TJ Lee, L Mickelson-Young, ...
The Plant Cell 29 (9), 2126-2149, 2017
292017
ANN1 and ANN2 function in post-phloem sugar transport in root tips to affect primary root growth
J Wang, J Song, G Clark, SJ Roux
Plant physiology 178 (1), 390-401, 2018
272018
CpG island-mediated global gene regulatory modes in mouse embryonic stem cells
S Beck, BK Lee, C Rhee, J Song, AJ Woo, J Kim
Nature communications 5 (1), 5490, 2014
272014
Repliscan: a tool for classifying replication timing regions
GJ Zynda, J Song, L Concia, EE Wear, L Hanley-Bowdoin, WF Thompson, ...
BMC bioinformatics 18, 1-14, 2017
142017
Implications of CpG islands on chromosomal architectures and modes of global gene regulation
S Beck, C Rhee, J Song, BK Lee, L LeBlanc, L Cannon, J Kim
Nucleic Acids Research 46 (9), 4382-4391, 2018
122018
Identifier services: modeling and implementing distributed data management in cyberinfrastructure
M Esteva, RL Walls, AB Magill, W Xu, R Huang, J Carson, J Song
Data and Information Management 3 (1), 26-39, 2019
62019
Content-based comparison for collections identification
W Xu, R Huang, M Esteva, J Song, R Walls
2016 IEEE International Conference on Big Data (Big Data), 3283-3289, 2016
62016
Bisulfite sequence analyses using CyVerse discovery environment: from mapping to DMRs
J Song, G Zynda, S Beck, NM Springer, MW Vaughn
Current protocols in plant biology 1 (3), 510-529, 2016
52016
Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots
EE Wear, J Song, GJ Zynda, L Mickelson-Young, C LeBlanc, TJ Lee, ...
PLoS Genetics 16 (10), e1008623, 2020
32020
CyVerse: Cyberinfrastructure for open science
TL Swetnam, PB Antin, R Bartelme, A Bucksch, D Camhy, G Chism, I Choi, ...
PLOS Computational Biology 20 (2), e1011270, 2024
22024
Conserved dual-mode gene regulation programs in higher eukaryotes
JY Lee, J Song, L LeBlanc, I Davis, J Kim, S Beck
Nucleic Acids Research 49 (5), 2583-2597, 2021
22021
Early COVID-19 pandemic modeling: Three compartmental model case studies from Texas, USA
KA Pierce, E Ho, X Wang, R Pasco, Z Du, G Zynda, J Song, G Wells, ...
Computing in science & engineering 23 (1), 25-34, 2020
12020
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