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Arsenii Zinkevich
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H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 histone tags suggest distinct regulatory evolution of open and condensed chromatin landmarks
AA Igolkina, A Zinkevich, KO Karandasheva, AA Popov, MV Selifanova, ...
Cells 8 (9), 1034, 2019
792019
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors
IE Vorontsov, IA Eliseeva, A Zinkevich, M Nikonov, S Abramov, A Boytsov, ...
Nucleic Acids Research 52 (D1), D154-D163, 2024
142024
LegNet: a best-in-class deep learning model for short DNA regulatory regions
D Penzar, D Nogina, E Noskova, A Zinkevich, G Meshcheryakov, A Lando, ...
Bioinformatics 39 (8), 2022
122022
COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity
V Naumov, E Putin, S Pushkov, E Kozlova, K Romantsov, A Kalashnikov, ...
PLoS computational biology 17 (7), e1009183, 2021
72021
What do neighbors tell about you: the local context of cis-regulatory modules complicates prediction of regulatory variants
DD Penzar, AO Zinkevich, IE Vorontsov, VV Sitnik, AV Favorov, ...
Frontiers in Genetics 10, 1078, 2019
32019
Ribonanza: deep learning of RNA structure through dual crowdsourcing
S He, R Huang, J Townley, RC Kretsch, TG Karagianes, DBT Cox, H Blair, ...
bioRxiv, 2024.02. 24.581671, 2024
22024
Evaluation and optimization of sequence-based gene regulatory deep learning models
AM Rafi, D Nogina, D Penzar, D Lee, D Lee, N Kim, S Kim, D Kim, Y Shin, ...
bioRxiv, 2023
22023
PREDICTION OF REGULATORY SEQUENCE VARIANTS USING DATA FROM MULTIPLE PARALLEL REPORTER ASSAYS
DD Penzar, AO Zinkevich, IE Vorontsov, VV Sitnik, AV Favorov, ...
VII Съезд Вавиловского общества генетиков и селекционеров, посвященный 100 …, 2019
2019
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