Broňa Brejová

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Tomas VinarComenius University in BratislavaVerified email at fmph.uniba.sk
Jozef NosekProfessor of Biochemistry, Comenius University in Bratislava, SlovakiaVerified email at uniba.sk
Lubomir TomaskaProfessor of Genetics, Comenius University in BratislavaVerified email at uniba.sk
Vladimir BozaIndependent researcher, Comenius UniversityVerified email at fmph.uniba.sk
Viktória HodorováComenius University in BratislavaVerified email at uniba.sk
Boris KlempaBiomedical Research Center of the Slovak Academy of SciencesVerified email at savba.sk
Therese BiedlUniversity of WaterlooVerified email at cs.uwaterloo.ca
Askar GafurovPostdoc, LIRRMVerified email at fmph.uniba.sk
B. Franz LangCentre Robert Cedergren, Biochimie, Universite de MontrealVerified email at umontreal.ca
Perešíni PeterComenius University, BratislavaVerified email at uniba.sk
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Ming LiUniversity Professor, University of WaterlooVerified email at uwaterloo.ca
Erik DemaineProfessor of Electrical Engineering and Computer Science, Massachusetts Institute of TechnologyVerified email at mit.edu
martina nebohacovaComenius UniversityVerified email at fns.uniba.sk
pavol cekanMultiplexDXVerified email at multiplexdx.com
Andrea CillingovaPostDoc at Faculty of natural sciences, Comenius UniversityVerified email at uniba.sk
Matus Valachpost-doctoral fellow, Université de Montréal, CanadaVerified email at umontreal.ca
Mark DiekhansUniversity of California, Santa Cruz; UC Santa Cruz Genomics InstituteVerified email at soe.ucsc.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
Andrej BalážComenius University, BratislavaVerified email at fmph.uniba.sk

Broňa Brejová

Dept. of Computer Science, Comenius University in Bratislava, Slovakia

Verified email at fmph.uniba.sk - Homepage

Bioinformatics


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Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529-533, 2011	715	2011
The Schistosoma japonicum genome reveals features of host–parasite interplay Functional genomics analysis Liu Feng 1 2 Hu Wei 7 Wang Zhi-Qin 1 Zhang Qin ... Nature 460 (7253), 345-351, 2009	561	2009
The genome of the hydatid tapeworm Echinococcus granulosus H Zheng, W Zhang, L Zhang, Z Zhang, J Li, G Lu, Y Zhu, Y Wang, ... Nature genetics 45 (10), 1168-1175, 2013	359	2013
DeepNano: deep recurrent neural networks for base calling in MinION nanopore reads V Boža, B Brejová, T Vinař PloS one 12 (6), e0178751, 2017	288	2017
The common marmoset genome provides insight into primate biology and evolution TMG Sequencing, Analysis Consortium Nature genetics 46 (8), 850, 2014	220	2014
The completion of the mammalian gene collection (MGC) G Temple, DS Gerhard, R Rasooly, EA Feingold, PJ Good, C Robinson, ... Genome research 19 (12), 2324-2333, 2009	160	2009
Evolution of linear chromosomes and multipartite genomes in yeast mitochondria M Valach, Z Farkas, D Fricova, J Kovac, B Brejova, T Vinar, I Pfeiffer, ... Nucleic acids research 39 (10), 4202-4219, 2011	89	2011
Optimal spaced seeds for homologous coding regions B Brejová, DG Brown, T Vinař Journal of Bioinformatics and Computational Biology 1 (04), 595-610, 2004	86	2004
Finding patterns in biological sequences B Brejová, C DiMarco, T Vinar, SR Hidalgo, G Holguin, C Patten Unpublished project report for CS798G, University of Waterloo, Fall, 2000	76	2000
Massive programmed translational jumping in mitochondria BF Lang, M Jakubkova, E Hegedusova, R Daoud, L Forget, B Brejova, ... Proceedings of the National Academy of Sciences 111 (16), 5926-5931, 2014	75	2014
Vector seeds: An extension to spaced seeds B Brejová, DG Brown, T Vinař Journal of Computer and System Sciences 70 (3), 364-380, 2005	74	2005
ExonHunter: a comprehensive approach to gene finding B Brejová, DG Brown, M Li, T Vinař Bioinformatics 21 (suppl_1), i57-i65, 2005	73	2005
Targeted discovery of novel human exons by comparative genomics A Siepel, M Diekhans, B Brejová, L Langton, M Stevens, CLG Comstock, ... Genome research 17 (12), 1763-1773, 2007	62	2007
Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution S Zhu, YZ Cao, C Jiang, BY Tan, Z Wang, S Feng, L Zhang, XH Su, ... BMC genomics 13, 1-10, 2012	61	2012
Vector seeds: an extension to spaced seeds allows substantial improvements in sensitivity and specificity B Brejová, DG Brown, T Vinař Algorithms in Bioinformatics: Third International Workshop, WABI 2003 …, 2003	60	2003
Optimal arrangement of leaves in the tree representing hierarchical clustering of gene expression data T Biedl, B Brejová, ED Demaine, AM Hamel, T Vinar University of Waterloo, Canada, 2001	47	2001
A draft genome sequence of the elusive giant squid, Architeuthis dux RR Da Fonseca, A Couto, AM Machado, B Brejova, CB Albertin, F Silva, ... GigaScience 9 (1), giz152, 2020	46	2020
Nanopore base calling on the edge P Perešíni, V Boža, B Brejová, T Vinař Bioinformatics 37 (24), 4661-4667, 2021	40	2021
On-line Viterbi algorithm for analysis of long biological sequences R Šrámek, B Brejová, T Vinař Algorithms in Bioinformatics: 7th International Workshop, WABI 2007 …, 2007	40*	2007
How Big is that Genome? Estimating Genome Size and Coverage from k-mer Abundance Spectra M Hozza, T Vinař, B Brejová String Processing and Information Retrieval: 22nd International Symposium …, 2015	37	2015

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