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Olga Tsoy
Olga Tsoy
Verified email at uni-hamburg.de
Title
Cited by
Cited by
Year
Comparative genomics of ethanolamine utilization
O Tsoy, D Ravcheev, A Mushegian
Journal of bacteriology 191 (23), 7157-7164, 2009
1082009
Nitrogen fixation and molecular oxygen: comparative genomic reconstruction of transcription regulation in Alphaproteobacteria
OV Tsoy, DA Ravcheev, J Čuklina, MS Gelfand
Frontiers in microbiology 7, 196683, 2016
822016
Comparative genomics and evolution of regulons of the LacI-family transcription factors
DA Ravcheev, MS Khoroshkin, ON Laikova, NV Sernova, PS Novichkov, ...
Frontiers in microbiology 5, 93698, 2014
792014
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan‐Vavilov Deep
F Smedile, E Messina, V La Cono, O Tsoy, LS Monticelli, M Borghini, ...
Environmental microbiology 15 (1), 167-182, 2013
642013
DIGGER: exploring the functional role of alternative splicing in protein interactions
Z Louadi, K Yuan, A Gress, O Tsoy, OV Kalinina, J Baumbach, ...
Nucleic acids research 49 (D1), D309-D318, 2021
312021
Evolution of transcriptional regulation in closely related bacteria
OV Tsoy, MA Pyatnitskiy, MD Kazanov, MS Gelfand
BMC evolutionary biology 12, 1-11, 2012
132012
Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases
Z Louadi, ML Elkjaer, M Klug, CT Lio, A Fenn, Z Illes, D Bongiovanni, ...
Genome Biology 22, 1-22, 2021
112021
Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110
J Hahn, OV Tsoy, S Thalmann, J Čuklina, MS Gelfand, ...
PLoS One 11 (10), e0165429, 2016
102016
Alternative splicing analysis benchmark with DICAST
A Fenn, O Tsoy, T Faro, FLM Rößler, A Dietrich, J Kersting, Z Louadi, ...
NAR Genomics and Bioinformatics 5 (2), lqad044, 2023
82023
ASimulatoR: splice-aware RNA-Seq data simulation
Q Manz, O Tsoy, A Fenn, J Baumbach, U Völker, M List, T Kacprowski
Bioinformatics 37 (18), 3008-3010, 2021
72021
Minimal genome encoding proteins with constrained amino acid repertoire
O Tsoy, M Yurieva, A Kucharavy, M O'Reilly, A Mushegian
Nucleic acids research 41 (18), 8444-8451, 2013
62013
Systematic analysis of alternative splicing in time course data using Spycone
CT Lio, G Grabert, Z Louadi, A Fenn, J Baumbach, T Kacprowski, M List, ...
Bioinformatics 39 (1), btac846, 2023
52023
Florigen and its homologs of FT/CETS/PEBP/RKIP/YbhB family may be the enzymes of small molecule metabolism: review of the evidence
O Tsoy, A Mushegian
BMC Plant Biology 22 (1), 56, 2022
52022
A YAP/TAZ–ARHGAP29–RhoA Signaling Axis Regulates Podocyte Protrusions and Integrin Adhesions
M Rogg, JI Maier, M Helmstädter, A Sammarco, F Kliewe, O Kretz, ...
Cells 12 (13), 1795, 2023
12023
The power and limits of predicting exon-exon interactions using protein 3D structures
J Liebold, A Del Moral-Morales, K Manalastas-Cantos, O Tsoy, S Kurtz, ...
bioRxiv, 2024.03. 01.582917, 2024
2024
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions
CT Lio, T Düz, MD Hoffmann, LL Willruth, J Baumbach, O Tsoy, M List
bioRxiv, 2024.01. 14.575548, 2024
2024
Network medicine-based epistasis detection in complex diseases: ready for quantum computing
M Hoffmann, JM Poschenrieder, M Incudini, S Baier, A Fitz, A Maier, ...
Medrxiv, 2023
2023
Proteomic meta-study harmonization, mechanotyping and drug repurposing candidate prediction with ProHarMeD
K Adamowicz, L Arend, A Maier, JR Schmidt, B Kuster, O Tsoy, ...
npj Systems Biology and Applications 9 (1), 49, 2023
2023
Detection of alternative splicing: deep sequencing or deep learning
LM Hackl, J Baumbach, OV Tsoy
Genetoberfest 2023, 2023
2023
Comparative analysis of single-cell RNA-seq protocols for transcript quantification
CT Lio, J Baumbach, M List, OV Tsoy, A Conesa
Genetoberfest 2023, 2023
2023
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Articles 1–20