| Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer’s disease S Forner, S Kawauchi, G Balderrama-Gutierrez, EA Kramár, DP Matheos, ... Scientific data 8 (1), 270, 2021 | 166 | 2021 |
| Systematic phenotyping and characterization of the 3xTg-AD mouse model of Alzheimer’s disease DI Javonillo, KM Tran, J Phan, E Hingco, EA Kramár, C da Cunha, ... Frontiers in Neuroscience 15, 785276, 2022 | 72 | 2022 |
| MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments H Alinejad-Rokny, R Ghavami Modegh, HR Rabiee, ... PLOS Computational Biology 18 (6), e1010241, 2022 | 13 | 2022 |
| Somatic point mutations are enriched in non-coding RNAs with possible regulatory function in breast cancer N Rezaie, M Bayati, M Hamidi, MS Tahaei, S Khorasani, NH Lovell, ... Communications Biology 5 (1), 556, 2022 | 11 | 2022 |
| Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer's disease. Sci Data 8: 270 S Forner, S Kawauchi, G Balderrama-Gutierrez, EA Kramár, DP Matheos, ... | 11 | 2021 |
| The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity F Reese, B Williams, G Balderrama-Gutierrez, D Wyman, MH Çelik, ... bioRxiv, 2023 | 10 | 2023 |
| MaxHiC: robust estimation of chromatin interaction frequency in Hi-C and capture Hi-C experiments H Alinejad-Rokny, RG Modegh, HR Rabiee, N Rezaie, KT Tam, ... bioRxiv, 2020.04. 23.056226, 2020 | 10 | 2020 |
| PyWGCNA: A Python package for weighted gene co-expression network analysis N Rezaie, F Reese, A Mortazavi Bioinformatics 39 (7), btad415, 2023 | 9 | 2023 |
| A Trem2R47H mouse model without cryptic splicing drives age- and disease-dependent tissue damage and synaptic loss in response to plaques KM Tran, S Kawauchi, EA Kramár, N Rezaie, HY Liang, JS Sakr, ... Molecular neurodegeneration 18 (1), 12, 2023 | 8 | 2023 |
| Single-cell and nucleus RNA-seq in a mouse model of AD reveal activation of distinct glial subpopulations in the presence of plaques and tangles G Balderrama-Gutierrez, H Liang, N Rezaie, K Carvalho, S Forner, ... bioRxiv, 2021.09. 29.462436, 2021 | 7 | 2021 |
| Correction: MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments H Alinejad-Rokny, R Ghavami Modegh, HR Rabiee, ... PLOS Computational Biology 18 (9), e1010515, 2022 | 1 | 2022 |
| Bulk and single‐nucleus analysis of the 3xTgAD cortex and hippocampus transcriptome N Rezaie, GB Gutierrez, HY Liang, S Forner, A Mortazavi, MODEL AD Alzheimer's & Dementia 17, e056475, 2021 | 1 | 2021 |
| The Abca7V1613M variant reduces Aβ generation, plaque load, and neuronal damage CA Butler, A Mendoza Arvilla, G Milinkeviciute, C Da Cunha, S Kawauchi, ... Alzheimer's & Dementia, 2024 | | 2024 |
| BIN1K358R suppresses glial response to plaques in mouse model of Alzheimer's disease LF Garcia‐Agudo, Z Shi, IF Smith, EA Kramár, K Tran, S Kawauchi, ... Alzheimer's & Dementia, 2024 | | 2024 |
| Identification of robust cellular programs using reproducible LDA that impact sex-specific disease progression in different genotypes of a mouse model of AD N Rezaie, E Rebboah, BA Williams, HY Liang, F Reese, ... bioRxiv, 2024.02. 26.582178, 2024 | | 2024 |
| A New R Package for Categorizing Coding and Non-Coding Genes M Bayati, N Rezaie, M Hamidi, MS Tahaei, H Rabiee Preprints, 2023 | | 2023 |
| Trem2 R47H NSS; 5xFAD mice display age/disease progression‐dependent changes in plaques and plaque‐associated microglia, and increased plasma … KM Tran, S Kawauchi, DI Javonillo, C Da Cunha, J Phan, N Rezaie, ... Alzheimer's & Dementia 18, e062610, 2022 | | 2022 |
| Bulk and single‐cell gene expression network analysis in mouse models of AD using PyWGCNA N Rezaie, M AD, A Mortazavi Alzheimer's & Dementia 18, e066349, 2022 | | 2022 |
| Phenotypic characterization of UCI MODEL‐AD mice using RNA‐seq M Gantuz, HY Liang, N Rezaie, M AD, A Mortazavi Alzheimer's & Dementia 18, e066273, 2022 | | 2022 |
| Systematic Phenotyping and Characterization of the 3xTg-AD Mouse Model of Alzheimer’s Disease R Brandt, MP Murphy, A Ittner, S Do Carmo, F Calon, KN Green, ... | | |
Ali MortazaviProfessor of Developmental and Cell Biology, University of California, IrvineVerified email at uci.edu
