A novel approach to the investigation of passive molecular permeation through lipid bilayers from atomistic simulations Z Ghaemi, M Minozzi, P Carloni, A Laio The journal of physical chemistry B 116 (29), 8714-8721, 2012 | 73 | 2012 |
Permeability coefficients of lipophilic compounds estimated by computer simulations Z Ghaemi, D Alberga, P Carloni, A Laio, G Lattanzi Journal of chemical theory and computation 12 (8), 4093-4099, 2016 | 26 | 2016 |
Analysis of the resistance mechanism of a benzoxaborole inhibitor reveals insight into the leucyl-tRNA synthetase editing mechanism H Zhao, A Palencia, E Seiradake, Z Ghaemi, S Cusack, Z Luthey-Schulten, ... ACS chemical biology 10 (10), 2277-2285, 2015 | 26 | 2015 |
Role of electrostatics in Protein–RNA binding: the global vs the local energy landscape Z Ghaemi, I Guzman, D Gnutt, Z Luthey-Schulten, M Gruebele The Journal of Physical Chemistry B 121 (36), 8437-8446, 2017 | 22 | 2017 |
The conformational change in elongation factor Tu involves separation of its domains J Lai, Z Ghaemi, Z Luthey-Schulten Biochemistry 56 (45), 5972-5979, 2017 | 19 | 2017 |
Molecular mechanism of capsid disassembly in hepatitis B virus Z Ghaemi, M Gruebele, E Tajkhorshid Proceedings of the National Academy of Sciences of the United States of …, 2021 | 18 | 2021 |
An in-silico human cell model reveals the influence of spatial organization on RNA splicing Z Ghaemi, JR Peterson, M Gruebele, Z Luthey-Schulten PLoS computational biology 16 (3), e1007717, 2020 | 18 | 2020 |
Native conformational dynamics of the spliceosomal U1A protein I Guzman, Z Ghaemi, A Baranger, Z Luthey-Schulten, M Gruebele The Journal of Physical Chemistry B 119 (9), 3651-3661, 2015 | 11 | 2015 |
Computational molecular biology approaches to ligand‐target interactions P Lupieri, CH Hung Nguyen, ZG Bafghi, A Giorgetti, P Carloni HFSP journal 3 (4), 228-239, 2009 | 11 | 2009 |
Estimation of relative Protein–RNA binding strengths from fluctuations in the bound state Z Ghaemi, I Guzman, JJ Baek, M Gruebele, Z Luthey-Schulten Journal of Chemical Theory and Computation 12 (9), 4593-4599, 2016 | 4 | 2016 |
Spliceosomal SL1 RNA binding to U1-70K: the role of the extended RRM G Gopan, Z Ghaemi, CM Davis, M Gruebele Nucleic acids research 50 (14), 8193-8206, 2022 | 1 | 2022 |
An In-Silico Mammalian Whole-Cell Model Reveals the Influence of Spatial Organization on RNA Splicing Efficiency Z Ghaemia, JR Peterson, M Gruebele, Z Luthey-Schulten bioRxiv, 435628, 2018 | 1 | 2018 |
Electrostatic Interaction Effects on the Binding of Spliceosomal U1A Protein-SL2 RNA Hairpin Z Ghaemi, I Guzman, M Gruebele, Z Luthey-Schulten Biophysical Journal 108 (2), 15a, 2015 | 1 | 2015 |
A computational spatial whole-Cell model for hepatitis B viral infection and drug interactions Z Ghaemi, O Nafiu, E Tajkhorshid, M Gruebele, J Hu Scientific reports 13 (1), 21392, 2023 | | 2023 |
Membrane binding is involved in the action of broadly neutralizing influenza antibodies D Gorgun, TJ Tan, PC Wen, M Frank, Z Ghaemi, NC Wu, E Tajkhorshid Biophysical Journal 122 (3), 448a-449a, 2023 | | 2023 |
A Spatial Whole-Cell Model for Hepatitis B Viral Infection and Drug Interactions Z Ghaemi, O Nafiu, E Tajkhorshid, M Gruebele, J Hu bioRxiv, 2022.06. 01.494377, 2022 | | 2022 |
Spliceosomal SL1 RNA binding to U1-70K: gaurdian under stress G Gopan, Z Ghaemi, C Davis, M Gruebele Biophysical Journal 121 (3), 288a, 2022 | | 2022 |
Hepatitis B viral capsid disassembly and genome synthesis: from the atomic level to the whole cell Z Ghaemi, M Gruebele, E Tajkhorshid Biophysical Journal 121 (3), 168a, 2022 | | 2022 |
Microscopic Characterization of Hepatitis B Virus Capsid Disassembly Z Ghaemi, M Gruebele, E Tajkhorshid Biophysical Journal 118 (3), 518a, 2020 | | 2020 |
A Computational Human Whole-Cell Model Reveals the Effects of Spatial Organization on RNA Splicing Z Ghaemi, Z Luthey-Schulten Biophysical Journal 116 (3), 167a, 2019 | | 2019 |