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Zhaleh Ghaemi
Zhaleh Ghaemi
Research Assistant Professor, University of Illinois at Urbana-Champaign
Verified email at illinois.edu - Homepage
Title
Cited by
Cited by
Year
A novel approach to the investigation of passive molecular permeation through lipid bilayers from atomistic simulations
Z Ghaemi, M Minozzi, P Carloni, A Laio
The journal of physical chemistry B 116 (29), 8714-8721, 2012
732012
Permeability coefficients of lipophilic compounds estimated by computer simulations
Z Ghaemi, D Alberga, P Carloni, A Laio, G Lattanzi
Journal of chemical theory and computation 12 (8), 4093-4099, 2016
262016
Analysis of the resistance mechanism of a benzoxaborole inhibitor reveals insight into the leucyl-tRNA synthetase editing mechanism
H Zhao, A Palencia, E Seiradake, Z Ghaemi, S Cusack, Z Luthey-Schulten, ...
ACS chemical biology 10 (10), 2277-2285, 2015
262015
Role of electrostatics in Protein–RNA binding: the global vs the local energy landscape
Z Ghaemi, I Guzman, D Gnutt, Z Luthey-Schulten, M Gruebele
The Journal of Physical Chemistry B 121 (36), 8437-8446, 2017
222017
The conformational change in elongation factor Tu involves separation of its domains
J Lai, Z Ghaemi, Z Luthey-Schulten
Biochemistry 56 (45), 5972-5979, 2017
192017
Molecular mechanism of capsid disassembly in hepatitis B virus
Z Ghaemi, M Gruebele, E Tajkhorshid
Proceedings of the National Academy of Sciences of the United States of …, 2021
182021
An in-silico human cell model reveals the influence of spatial organization on RNA splicing
Z Ghaemi, JR Peterson, M Gruebele, Z Luthey-Schulten
PLoS computational biology 16 (3), e1007717, 2020
182020
Native conformational dynamics of the spliceosomal U1A protein
I Guzman, Z Ghaemi, A Baranger, Z Luthey-Schulten, M Gruebele
The Journal of Physical Chemistry B 119 (9), 3651-3661, 2015
112015
Computational molecular biology approaches to ligand‐target interactions
P Lupieri, CH Hung Nguyen, ZG Bafghi, A Giorgetti, P Carloni
HFSP journal 3 (4), 228-239, 2009
112009
Estimation of relative Protein–RNA binding strengths from fluctuations in the bound state
Z Ghaemi, I Guzman, JJ Baek, M Gruebele, Z Luthey-Schulten
Journal of Chemical Theory and Computation 12 (9), 4593-4599, 2016
42016
Spliceosomal SL1 RNA binding to U1-70K: the role of the extended RRM
G Gopan, Z Ghaemi, CM Davis, M Gruebele
Nucleic acids research 50 (14), 8193-8206, 2022
12022
An In-Silico Mammalian Whole-Cell Model Reveals the Influence of Spatial Organization on RNA Splicing Efficiency
Z Ghaemia, JR Peterson, M Gruebele, Z Luthey-Schulten
bioRxiv, 435628, 2018
12018
Electrostatic Interaction Effects on the Binding of Spliceosomal U1A Protein-SL2 RNA Hairpin
Z Ghaemi, I Guzman, M Gruebele, Z Luthey-Schulten
Biophysical Journal 108 (2), 15a, 2015
12015
A computational spatial whole-Cell model for hepatitis B viral infection and drug interactions
Z Ghaemi, O Nafiu, E Tajkhorshid, M Gruebele, J Hu
Scientific reports 13 (1), 21392, 2023
2023
Membrane binding is involved in the action of broadly neutralizing influenza antibodies
D Gorgun, TJ Tan, PC Wen, M Frank, Z Ghaemi, NC Wu, E Tajkhorshid
Biophysical Journal 122 (3), 448a-449a, 2023
2023
A Spatial Whole-Cell Model for Hepatitis B Viral Infection and Drug Interactions
Z Ghaemi, O Nafiu, E Tajkhorshid, M Gruebele, J Hu
bioRxiv, 2022.06. 01.494377, 2022
2022
Spliceosomal SL1 RNA binding to U1-70K: gaurdian under stress
G Gopan, Z Ghaemi, C Davis, M Gruebele
Biophysical Journal 121 (3), 288a, 2022
2022
Hepatitis B viral capsid disassembly and genome synthesis: from the atomic level to the whole cell
Z Ghaemi, M Gruebele, E Tajkhorshid
Biophysical Journal 121 (3), 168a, 2022
2022
Microscopic Characterization of Hepatitis B Virus Capsid Disassembly
Z Ghaemi, M Gruebele, E Tajkhorshid
Biophysical Journal 118 (3), 518a, 2020
2020
A Computational Human Whole-Cell Model Reveals the Effects of Spatial Organization on RNA Splicing
Z Ghaemi, Z Luthey-Schulten
Biophysical Journal 116 (3), 167a, 2019
2019
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