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Alexander G. McFarland
Alexander G. McFarland
Bioinformatician, University of Pennsylvania
Verified email at u.northwestern.edu - Homepage
Title
Cited by
Cited by
Year
Antimicrobial chemicals associate with microbial function and antibiotic resistance indoors
AK Fahimipour, S Ben Maamar, AG McFarland, RA Blaustein, J Chen, ...
MSystems 3 (6), 10.1128/msystems. 00200-18, 2018
63*2018
Pangenomic approach to understanding microbial adaptations within a model built environment, the International Space Station, relative to human hosts and soil
RA Blaustein, AG McFarland, S Ben Maamar, A Lopez, S Castro-Wallace, ...
MSystems 4 (1), 10.1128/msystems. 00281-18, 2019
422019
The pseudophosphatase MK-STYX induces neurite-like outgrowths in PC12 cells
BM Flowers, LE Rusnak, KE Wong, DA Banks, MR Munyikwa, ...
PLoS One 9 (12), e114535, 2014
242014
MK-STYX alters the morphology of primary neurons, and outgrowths in MK-STYX overexpressing PC-12 cells develop a neuronal phenotype
DA Banks, A Dahal, AG McFarland, BM Flowers, CA Stephens, B Swack, ...
Frontiers in molecular biosciences 4, 76, 2017
222017
Toward accurate and robust environmental surveillance using metagenomics
J Shen, AG McFarland, VB Young, MK Hayden, EM Hartmann
Frontiers in Genetics 12, 600111, 2021
172021
Structure and functional attributes of bacterial communities in premise plumbing across the United States
TM Webster, A McFarland, MJ Gebert, AM Oliverio, LM Nichols, RR Dunn, ...
Environmental Science & Technology 55 (20), 14105-14114, 2021
162021
Triclosan Tolerance Is Driven by a Conserved Mechanism in Diverse Pseudomonas Species
AG McFarland, HK Bertucci, E Littman, J Shen, C Huttenhower, ...
Applied and Environmental Microbiology 87 (7), e02924-20, 2021
92021
Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors. mSystems 3
AK Fahimipour, S Benmaamar, AG McFarland, RA Blaustein, J Chen, ...
62018
Mosaic ends tagmentation (METa) assembly for highly efficient construction of functional metagenomic libraries
TS Crofts, AG McFarland, EM Hartmann
Msystems 6 (3), 10.1128/msystems. 00524-21, 2021
52021
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics
J Shen, AG McFarland, RA Blaustein, LJ Rose, KA Perry-Dow, ...
Microbiome 10 (1), 206, 2022
42022
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper
AG McFarland, NW Kennedy, CE Mills, D Tullman-Ercek, C Huttenhower, ...
Bioinformatics 38 (3), 612-620, 2022
32022
The HIV-1 Capsid-Targeted Inhibitor GSK878 Alters Selection of Target Sites for HIV DNA Integration
KA Marquis, J Everett, A Cantu, A McFarland, S Sherrill-Mix, M Krystal, ...
AIDS Research and Human Retroviruses 40 (2), 114-126, 2024
12024
Mosaic Ends Tagmentation (METa) assembly for extremely efficient construction of functional metagenomic libraries
TS Crofts, AG McFarland, EM Hartmann
bioRxiv, 2021.02. 01.429292, 2021
12021
Within-Host Influenza Viral Diversity in the Pediatric Population as a Function of Age, Vaccine and Health Status
AS Leonard, L Mendoza, AG McFarland, A Marques, JK Everett, L Moncla, ...
Virus Evolution, veae034, 2024
2024
The virome of the kitome: small circular virus-like genomes in laboratory reagents
J Duan, E Keeler, A McFarland, P Scott, RG Collman, FD Bushman
Microbiology Resource Announcements, e01261-23, 2024
2024
An improved workflow for healthcare environmental surveillance using metagenomics
J Shen, AG McFarland, RA Blaustein, LJ Rose, KA Perry-Dow, ...
2023
Employing Evolutionary History and Genetic Context to Better Infer Gene Function in Metagenomic and Whole-Genome Sequencing Data
AG McFarland
Northwestern University, 2021
2021
Blind Spots in Methods Based on Cultivation and Metagenomic Sequencing for Surface Microbiomes in a Medical Intensive Care Unit
J Shen, A McFarland, R Blaustein, M Hayden, V Young, E Hartmann
Infection Control & Hospital Epidemiology 41 (S1), s141-s142, 2020
2020
Discovery of Mobile Triclosan Tolerance Genes in Pseudomonas Using High-throughput Conserved Gene Synteny Analysis
AG McFarland, HK Bertucci, E Littman, J Shen, C Huttenhower, ...
ASM Microbe 2020, 2020
2020
Fab Isozyme Determines High or Low Triclosan Tolerance in Diverse Members of Pseudomonas
AG McFarland, E Bertucci, Hanna K, Littman, J Shen, C Huttenhower, ...
ASM microbe 2020, 2020
2020
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