| The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 B Boeckmann, A Bairoch, R Apweiler, MC Blatter, A Estreicher, ... Nucleic acids research 31 (1), 365-370, 2003 | 4439 | 2003 |
| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 4092 | 2005 |
| UniProt: the universal protein knowledgebase R Apweiler, A Bairoch, CH Wu, WC Barker, B Boeckmann, S Ferro, ... Nucleic acids research 32 (suppl_1), D115-D119, 2004 | 3961 | 2004 |
| The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 A Bairoch, R Apweiler Nucleic acids research 28 (1), 45-48, 2000 | 3425 | 2000 |
| InterProScan–an integration platform for the signature-recognition methods in InterPro EM Zdobnov, R Apweiler Bioinformatics 17 (9), 847-848, 2001 | 3270 | 2001 |
| InterProScan: protein domains identifier E Quevillon, V Silventoinen, S Pillai, N Harte, N Mulder, R Apweiler, ... Nucleic acids research 33 (suppl_2), W116-W120, 2005 | 3019 | 2005 |
| ProteomeXchange provides globally coordinated proteomics data submission and dissemination JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ... Nature biotechnology 32 (3), 223-226, 2014 | 2695 | 2014 |
| On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database R Apweiler, H Hermjakob, N Sharon Biochimica et Biophysica Acta (BBA)-General Subjects 1473 (1), 4-8, 1999 | 2453 | 1999 |
| The universal protein resource (UniProt) A Bairoch, R Apweiler, CH Wu, WC Barker, B Boeckmann, S Ferro, ... Nucleic acids research 33 (suppl_1), D154-D159, 2005 | 2262 | 2005 |
| Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads K Ye, MH Schulz, Q Long, R Apweiler, Z Ning Bioinformatics 25 (21), 2865-2871, 2009 | 2229 | 2009 |
| InterPro: the integrative protein signature database S Hunter, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, P Bork, ... Nucleic acids research 37 (suppl_1), D211-D215, 2009 | 2213 | 2009 |
| Comparative genomics of the eukaryotes GM Rubin, MD Yandell, JR Wortman, GL Gabor, Miklos, CR Nelson, ... Science 287 (5461), 2204-2215, 2000 | 2172 | 2000 |
| Evaluation of methods for the prediction of membrane spanning regions S Möller, MDR Croning, R Apweiler Bioinformatics 17 (7), 646-653, 2001 | 1353 | 2001 |
| The Universal Protein Resource (UniProt): an expanding universe of protein information CH Wu, R Apweiler, A Bairoch, DA Natale, WC Barker, B Boeckmann, ... Nucleic acids research 34 (suppl_1), D187-D191, 2006 | 1324 | 2006 |
| The InterPro database, an integrated documentation resource for protein families, domains and functional sites R Apweiler, TK Attwood, A Bairoch, A Bateman, E Birney, M Biswas, ... Nucleic acids research 29 (1), 37-40, 2001 | 1274 | 2001 |
| InterPro in 2011: new developments in the family and domain prediction database S Hunter, P Jones, A Mitchell, R Apweiler, TK Attwood, A Bateman, ... Nucleic acids research 40 (D1), D306-D312, 2012 | 1269 | 2012 |
| IntAct: an open source molecular interaction database H Hermjakob, L Montecchi‐Palazzi, C Lewington, S Mudali, S Kerrien, ... Nucleic acids research 32 (suppl_1), D452-D455, 2004 | 1196 | 2004 |
| The gene ontology annotation (goa) database: sharing knowledge in uniprot with gene ontology E Camon, M Magrane, D Barrell, V Lee, E Dimmer, J Maslen, D Binns, ... Nucleic acids research 32 (suppl_1), D262-D266, 2004 | 1093 | 2004 |
| A common open representation of mass spectrometry data and its application to proteomics research PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ... Nature biotechnology 22 (11), 1459-1466, 2004 | 963 | 2004 |
| IntAct—open source resource for molecular interaction data S Kerrien, Y Alam-Faruque, B Aranda, I Bancarz, A Bridge, C Derow, ... Nucleic acids research 35 (suppl_1), D561-D565, 2007 | 939 | 2007 |
