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Alex Tsankov
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SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
W Sungnak, N Huang, C Bécavin, M Berg, R Queen, M Litvinukova, ...
Nature medicine 26 (5), 681-687, 2020
27052020
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
23402020
A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
DT Montoro, AL Haber, M Biton, V Vinarsky, B Lin, SE Birket, F Yuan, ...
Nature 560 (7718), 319-324, 2018
10712018
A comparison of non-integrating reprogramming methods
TM Schlaeger, L Daheron, TR Brickler, S Entwisle, K Chan, A Cianci, ...
Nature biotechnology 33 (1), 58-63, 2015
5572015
Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells
J Liao, R Karnik, H Gu, MJ Ziller, K Clement, AM Tsankov, V Akopian, ...
Nature genetics 47 (5), 469-478, 2015
5312015
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ...
Cell 153 (5), 1149-1163, 2013
4842013
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ...
Nature medicine 26 (5), 792-802, 2020
4342020
Transcription factor binding dynamics during human ES cell differentiation
AM Tsankov, H Gu, V Akopian, MJ Ziller, J Donaghey, I Amit, A Gnirke, ...
Nature 518 (7539), 344-349, 2015
3722015
Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19
JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ...
Immunity 53 (6), 1296-1314. e9, 2020
2972020
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine 27 (3), 546-559, 2021
2962021
A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs
J Choi, S Lee, W Mallard, K Clement, GM Tagliazucchi, H Lim, IY Choi, ...
Nature biotechnology 33 (11), 1173-1181, 2015
2922015
The role of nucleosome positioning in the evolution of gene regulation
AM Tsankov, DA Thompson, A Socha, A Regev, OJ Rando
PLoS biology 8 (7), e1000414, 2010
2632010
Emergence of a high-plasticity cell state during lung cancer evolution
ND Marjanovic, M Hofree, JE Chan, D Canner, K Wu, M Trakala, ...
Cancer cell 38 (2), 229-246. e13, 2020
2382020
Automated, high-throughput derivation, characterization and differentiation of induced pluripotent stem cells
D Paull, A Sevilla, H Zhou, AK Hahn, H Kim, C Napolitano, A Tsankov, ...
Nature methods 12 (9), 885-892, 2015
2382015
Dissecting neural differentiation regulatory networks through epigenetic footprinting
MJ Ziller, R Edri, Y Yaffe, J Donaghey, R Pop, W Mallard, R Issner, ...
Nature 518 (7539), 355-359, 2015
2132015
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function
G Eraslan, E Drokhlyansky, S Anand, E Fiskin, A Subramanian, M Slyper, ...
Science 376 (6594), eabl4290, 2022
2042022
A qPCR ScoreCard quantifies the differentiation potential of human pluripotent stem cells
AM Tsankov, V Akopian, R Pop, S Chetty, CA Gifford, L Daheron, ...
Nature biotechnology 33 (11), 1182-1192, 2015
1722015
SARS-CoV-2 entry genes are most highly expressed in nasal goblet and ciliated cells within human airways
W Sungnak, N Huang, C Bécavin, M Berg, HCALB Network
ArXiv, 2020
1692020
Induced pluripotent stem cell differentiation enables functional validation of GWAS variants in metabolic disease
CR Warren, JF O’Sullivan, M Friesen, CE Becker, X Zhang, P Liu, ...
Cell stem cell 20 (4), 547-557. e7, 2017
1592017
An integrated cell atlas of the lung in health and disease
L Sikkema, C Ramírez-Suástegui, DC Strobl, TE Gillett, L Zappia, ...
Nature Medicine 29 (6), 1563-1577, 2023
1422023
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