| Recurrent rearrangements in PRKACA and PRKACB in intraductal oncocytic papillary neoplasms of the pancreas and bile duct AD Singhi, LD Wood, E Parks, MS Torbenson, M Felsenstein, RH Hruban, ... Gastroenterology 158 (3), 573-582. e2, 2020 | 126 | 2020 |
| ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python S Zhang, JM Krieger, Y Zhang, C Kaya, B Kaynak, K Mikulska-Ruminska, ... Bioinformatics 37 (20), 3657-3659, 2021 | 97 | 2021 |
| GLIS rearrangement is a genomic hallmark of hyalinizing trabecular tumor of the thyroid gland MN Nikiforova, AV Nikitski, F Panebianco, C Kaya, L Yip, M Williams, ... Thyroid 29 (2), 161-173, 2019 | 76 | 2019 |
| MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues C Kaya, A Armutlulu, S Ekesan, T Haliloglu Nucleic acids research 41 (W1), W249-W255, 2013 | 76 | 2013 |
| Prospective, multi-institutional, real-time next-generation sequencing of pancreatic cyst fluid reveals diverse genomic alterations that improve the clinical management of … A Paniccia, PM Polanco, BA Boone, AI Wald, K McGrath, RE Brand, ... Gastroenterology 164 (1), 117-133. e7, 2023 | 64 | 2023 |
| Structure-encoded global motions and their role in mediating protein-substrate interactions I Bahar, MH Cheng, JY Lee, C Kaya, S Zhang Biophysical journal 109 (6), 1101-1109, 2015 | 62 | 2015 |
| Characterization of thyroid cancer driven by known and novel ALK fusions F Panebianco, AV Nikitski, MN Nikiforova, C Kaya, L Yip, V Condello, ... Endocrine-related cancer 26 (11), 803-814, 2019 | 57 | 2019 |
| Large expert-curated database for benchmarking document similarity detection in biomedical literature search P Brown, AC Tan, MA El-Esawi, T Liehr, O Blanck, DP Gladue, ... Database 2019, 2019 | 34 | 2019 |
| Thyroid cytology smear slides: An untapped resource for ThyroSeq testing MN Nikiforova, M Lepe, LA Tolino, ME Miller, NP Ohori, AI Wald, ... Cancer cytopathology 129 (1), 33-42, 2021 | 31 | 2021 |
| Comparative study of the effectiveness and limitations of current methods for detecting sequence coevolution W Mao, C Kaya, A Dutta, A Horovitz, I Bahar Bioinformatics 31 (12), 1929-1937, 2015 | 28 | 2015 |
| Limitations of detecting genetic variants from the RNA sequencing data in tissue and fine-needle aspiration samples C Kaya, P Dorsaint, S Mercurio, AM Campbell, KW Eng, MN Nikiforova, ... Thyroid 31 (4), 589-595, 2021 | 25 | 2021 |
| Mouse model of thyroid cancer progression and dedifferentiation driven by STRN-ALK expression and loss of p53: evidence for the existence of two types of poorly differentiated … AV Nikitski, SL Rominski, V Condello, C Kaya, M Wankhede, ... Thyroid 29 (10), 1425-1437, 2019 | 25 | 2019 |
| Quantitative assessment of the energetics of dopamine translocation by human dopamine transporter MH Cheng, C Kaya, I Bahar The Journal of Physical Chemistry B 122 (21), 5336-5346, 2017 | 23 | 2017 |
| KRAS amplification in metastatic colon cancer is associated with a history of inflammatory bowel disease and may confer resistance to anti-EGFR therapy LA Favazza, CM Parseghian, C Kaya, MN Nikiforova, S Roy, AI Wald, ... Modern pathology 33 (9), 1832-1843, 2020 | 20 | 2020 |
| Characterization of Activating Mutations of the MEK1 Gene in Papillary Thyroid Carcinomas N Borrelli, F Panebianco, V Condello, JA Barletta, C Kaya, L Yip, ... Thyroid 29 (9), 1279-1285, 2019 | 11 | 2019 |
| Heterogeneities in axonal structure and transporter distribution lower dopamine reuptake efficiency C Kaya, MH Cheng, ER Block, TM Bartol, TJ Sejnowski, A Sorkin, ... eneuro 5 (1), 2018 | 10 | 2018 |
| RNA Sequencing Identifies Frequent Mitogen-activated Protein Kinase–associated Fusion Genes in Intraductal Tubulopapillary Neoplasms of the Pancreas JW Lee, RH Hruban, LAA Brosens, V Condello, MN Nikiforova, AD Singhi, ... Gastroenterology 164 (7), 1310-1313. e6, 2023 | 4 | 2023 |
| CKD Progression Prediction in a Diverse US Population: A Machine-Learning Model J Aoki, C Kaya, O Khalid, T Kothari, MA Silberman, C Skordis, J Hughes, ... Kidney Medicine 5 (9), 100692, 2023 | 3 | 2023 |
| Multi-scale spatial simulations reveal the effect of dopamine transporter localization on dopamine neurotransmission C Kaya, ER Block, A Sorkin, JR Faeder, I Bahar Biophysical Journal 110 (3), 632a, 2016 | 3 | 2016 |
| MON-570 clinical utility of ThyroSeq v3 genomic classifier test in detecting gene fusions in thyroid nodules M Nikiforova, A Wald, C Kaya, L Tolino, Y Nikiforov Journal of the Endocrine Society 3 (Supplement_1), MON-570, 2019 | 2 | 2019 |
Ivet BaharDirector, Laufer Center for Physical & Quantitative Biology, Stony Brook UniversityVerified email at pitt.edu
