| Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... nature 486 (7402), 207, 2012 | 4824 | 2012 |
| Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814, 2013 | 3252 | 2013 |
| Metagenomic biomarker discovery and explanation N Segata, J Izard, L Waldron, D Gevers, L Miropolsky, WS Garrett, ... Genome biology 12 (6), R60, 2011 | 3102 | 2011 |
| The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014 | 1452 | 2014 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012 | 1386 | 2012 |
| Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ... Genome biology 13 (9), R79, 2012 | 1373 | 2012 |
| Genomic analysis identifies association of Fusobacterium with colorectal carcinoma AD Kostic, D Gevers, CS Pedamallu, M Michaud, F Duke, AM Earl, ... Genome research 22 (2), 292-298, 2012 | 1023 | 2012 |
| Metagenomic microbial community profiling using unique clade-specific marker genes N Segata, L Waldron, A Ballarini, V Narasimhan, O Jousson, ... Nature methods 9 (8), 811, 2012 | 904 | 2012 |
| Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis JU Scher, A Sczesnak, RS Longman, N Segata, C Ubeda, C Bielski, ... elife 2, e01202, 2013 | 834 | 2013 |
| Microbial co-occurrence relationships in the human microbiome K Faust, JF Sathirapongsasuti, J Izard, N Segata, D Gevers, J Raes, ... PLoS computational biology 8 (7), e1002606, 2012 | 745 | 2012 |
| Metabolic reconstruction for metagenomic data and its application to the human microbiome S Abubucker, N Segata, J Goll, AM Schubert, J Izard, BL Cantarel, ... PLoS computational biology 8 (6), e1002358, 2012 | 730 | 2012 |
| Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry A Chi, C Huttenhower, LY Geer, JJ Coon, JEP Syka, DL Bai, ... Proceedings of the National Academy of Sciences 104 (7), 2193-2198, 2007 | 619 | 2007 |
| MetaPhlAn2 for enhanced metagenomic taxonomic profiling DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ... Nature methods 12 (10), 902, 2015 | 549 | 2015 |
| Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity A Zhernakova, A Kurilshikov, MJ Bonder, EF Tigchelaar, M Schirmer, ... Science 352 (6285), 565-569, 2016 | 547 | 2016 |
| The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes AD Kostic, D Gevers, H Siljander, T Vatanen, T Hyötyläinen, ... Cell host & microbe 17 (2), 260-273, 2015 | 517 | 2015 |
| The healthy human microbiome J Lloyd-Price, G Abu-Ali, C Huttenhower Genome medicine 8 (1), 1-11, 2016 | 490 | 2016 |
| Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast MJ Brauer, C Huttenhower, EM Airoldi, R Rosenstein, JC Matese, ... Molecular biology of the cell 19 (1), 352-367, 2008 | 476 | 2008 |
| Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples N Segata, SK Haake, P Mannon, KP Lemon, L Waldron, D Gevers, ... Genome biology 13 (6), R42, 2012 | 467 | 2012 |
| Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans T Vatanen, AD Kostic, E d’Hennezel, H Siljander, EA Franzosa, ... Cell 165 (4), 842-853, 2016 | 455 | 2016 |
| A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy K Aagaard, K Riehle, J Ma, N Segata, TA Mistretta, C Coarfa, S Raza, ... PloS one 7 (6), e36466, 2012 | 424 | 2012 |
