| DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors CS McGinnis, LM Murrow, ZJ Gartner Cell systems 8 (4), 329-337. e4, 2019 | 1807 | 2019 |
| MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices CS McGinnis, DM Patterson, J Winkler, DN Conrad, MY Hein, ... Nature methods 16 (7), 619-626, 2019 | 496 | 2019 |
| Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution JSW D Yang, MG Jones, S Naranjo, WM Rideout III, KH Min, R Ho, W Wu, JM ... Cell 185, 1-19, 2022 | 125* | 2022 |
| ZipSeq: barcoding for real-time mapping of single cell transcriptomes KH Hu, JP Eichorst, CS McGinnis, DM Patterson, ED Chow, K Kersten, ... Nature Methods 17 (8), 833-843, 2020 | 110 | 2020 |
| Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids G Popova, SS Soliman, CN Kim, MG Keefe, KM Hennick, S Jain, T Li, ... Cell Stem Cell 28 (12), 2153-2166. e6, 2021 | 107 | 2021 |
| Cell population structure prior to bifurcation predicts efficiency of directed differentiation in human induced pluripotent cells R Bargaje, K Trachana, MN Shelton, CS McGinnis, JX Zhou, C Chadick, ... Proceedings of the National Academy of Sciences 114 (9), 2271-2276, 2017 | 88 | 2017 |
| DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors. Cell Syst. 8, 329–337. e4 CS McGinnis, LM Murrow, ZJ Gartner | 65 | 2019 |
| AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data A Thibodeau, A Eroglu, CS McGinnis, N Lawlor, D Nehar-Belaid, ... Genome biology 22, 1-19, 2021 | 42 | 2021 |
| Mapping hormone-regulated cell-cell interaction networks in the human breast at single-cell resolution ZJG LM Murrow, RJ Weber, JA Caruso, CS McGinnis, K Phong, P Gascard, G ... Cell Systems 13 (8), 1-21, 2022 | 29* | 2022 |
| Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia L Su-Feher, AN Rubin, SN Silberberg, R Catta-Preta, KJ Lim, AR Ypsilanti, ... Proceedings of the National Academy of Sciences 119 (15), e2108760119, 2022 | 14 | 2022 |
| No detectable alloreactive transcriptional responses under standard sample preparation conditions during donor-multiplexed single-cell RNA sequencing of peripheral blood … LSA McGinnis CS, Siegel DA, Xie G, Hartoularos G, Stone M, Ye CJ, Gartner ZJ ... BMC Biology 19 (1), 10, 2021 | 7* | 2021 |
| Dissecting the contributions of tumor heterogeneity on metastasis at single-cell resolution J Winkler, W Tan, CMM Diadhiou, CS McGinnis, A Abbasi, S Hasnain, ... bioRxiv, 2022.08. 04.502697, 2022 | 4 | 2022 |
| Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains RK Zwick, P Kasparek, B Palikuqi, S Viragova, L Weichselbaum, ... Nature Cell Biology, 1-13, 2024 | 2 | 2024 |
| The temporal progression of immune remodeling during metastasis CS McGinnis, Z Miao, NE Reticker-Flynn, J Winker, AT Satpathy bioRxiv, 2023.05. 04.539153, 2023 | 2 | 2023 |
| Patterning and folding of intestinal villi by active mesenchymal dewetting TR Huycke, H Miyazaki, TJ Häkkinen, V Srivastava, E Barruet, ... bioRxiv, 2023 | 1 | 2023 |
| D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response J Jiang, S Chen, T Tsou, CS McGinnis, T Khazaei, Q Zhu, JH Park, ... bioRxiv, 2023 | 1 | 2023 |
| Lipid-modified oligonucleotides and methods of using the same ZJ Gartner, D Patterson, ED Chow, R Weber, C McGinnis US Patent App. 17/258,420, 2021 | 1 | 2021 |
| Lipid-modified oligonucleotides and methods of using the same Z Gartner, D Patterson, E Chow, R Weber, C McGinnis US Patent App. 17/625,687, 2022 | | 2022 |
| Therapeutic algebra of immunomodulatory drug responses at single-cell resolution J Jiang, S Chen, T Tsou, CS McGinnis, T Khazaei, Q Zhu, JH Park, ... arXiv preprint arXiv:2208.10661, 2022 | | 2022 |
| Improving single-cell genomics scalability and data interpretability for applications in single-cell chemical transcriptomics C McGinnis University of California, San Francisco, 2021 | | 2021 |
Zev J GartnerProfessor of Pharmaceutical Chemistry, University of California San FranciscoVerified email at ucsf.edu
