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Fan Zhang, PhD
Fan Zhang, PhD
Assistant Professor, University of Colorado | Alumni Harvard Medical School, Broad Institute
Verified email at cuanschutz.edu - Homepage
Title
Cited by
Cited by
Year
Fast, sensitive and accurate integration of single-cell data with Harmony
I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang, K Wei, ...
Nature methods 16 (12), 1289-1296, 2019
36672019
Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry
F Zhang, K Wei, K Slowikowski, CY Fonseka, DA Rao, S Kelly, ...
Nature immunology 20 (7), 928, 2019
8442019
The immune cell landscape in kidneys of patients with lupus nephritis
A Arazi, DA Rao, CC Berthier, A Davidson, Y Liu, PJ Hoover, A Chicoine, ...
Nature immunology 20 (7), 902-914, 2019
5622019
Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways
E Der, H Suryawanshi, P Morozov, M Kustagi, B Goilav, S Ranabothu, ...
Nature immunology 20 (7), 915-927, 2019
3032019
Notch signalling drives synovial fibroblast identity and arthritis pathology
K Wei, I Korsunsky, JL Marshall, A Gao, GFM Watts, T Major, AP Croft, ...
Nature 582 (7811), 259-264, 2020
2992020
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation
F Zhang, JR Mears, L Shakib, JI Beynor, S Shanaj, I Korsunsky, A Nathan, ...
Genome Medicine 13, 1-17, 2021
161*2021
HBEGF+ macrophages in rheumatoid arthritis induce fibroblast invasiveness
D Kuo, J Ding, IS Cohn, F Zhang, K Wei, DA Rao, C Rozo, UK Sokhi, ...
Science translational medicine 11 (491), eaau8587, 2019
1582019
Single-cell transcriptomics in cancer: computational challenges and opportunities
J Fan, K Slowikowski, F Zhang
Experimental & Molecular Medicine 52 (9), 1452-1465, 2020
1412020
RNA identification of PRIME cells predicting rheumatoid arthritis flares
DE Orange, V Yao, K Sawicka, J Fak, MO Frank, S Parveen, NE Blachere, ...
New England Journal of Medicine 383 (3), 218-228, 2020
1412020
Efficient and precise single-cell reference atlas mapping with Symphony
JB Kang, A Nathan, K Weinand, F Zhang, N Millard, L Rumker, DB Moody, ...
Nature communications 12 (1), 5890, 2021
1162021
Methods for high-dimensional analysis of cells dissociated from cryopreserved synovial tissue
LT Donlin, DA Rao, K Wei, K Slowikowski, MJ McGeachy, JD Turner, ...
Arthritis research & therapy 20, 1-15, 2018
972018
Granzyme K+ CD8 T cells form a core population in inflamed human tissue
AH Jonsson, F Zhang, G Dunlap, E Gomez-Rivas, GFM Watts, HJ Faust, ...
Science translational medicine 14 (649), eabo0686, 2022
792022
FcγR engagement reprograms neutrophils into antigen cross-presenting cells that elicit acquired anti-tumor immunity
V Mysore, X Cullere, J Mears, F Rosetti, K Okubo, PX Liew, F Zhang, ...
Nature communications 12 (1), 4791, 2021
652021
Prediction of drought-resistant genes in Arabidopsis thaliana using SVM-RFE
Y Liang, F Zhang, J Wang, T Joshi, Y Wang, D Xu
PLoS one 6 (7), e21750, 2011
542011
Urine proteomics and renal single‐cell transcriptomics implicate interleukin‐16 in lupus nephritis
A Fava, DA Rao, C Mohan, T Zhang, A Rosenberg, P Fenaroli, ...
Arthritis & Rheumatology 74 (5), 829-839, 2022
472022
Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes
F Zhang, AH Jonsson, A Nathan, N Millard, M Curtis, Q Xiao, ...
Nature 623 (7987), 616-624, 2023
46*2023
Bioelectric signal detrending using smoothness prior approach
F Zhang, S Chen, H Zhang, X Zhang, G Li
Medical engineering & physics 36 (8), 1007-1013, 2014
262014
Accelerating Medicines Partnership in SLE network
A Arazi, DA Rao, CC Berthier, A Davidson, Y Liu, PJ Hoover, A Chicoine, ...
The immune cell landscape in kidneys of patients with lupus nephritis. Nat …, 2019
222019
Dynamic spectrum of ectopic lymphoid B cell activation and hypermutation in the RA synovium characterized by NR4A nuclear receptor expression
N Meednu, J Rangel-Moreno, F Zhang, K Escalera-Rivera, E Corsiero, ...
Cell reports 39 (5), 2022
212022
Reduction of the effect of arm position variation on real-time performance of motion classification
Y Geng, F Zhang, L Yang, Y Zhang, G Li
2012 Annual International Conference of the IEEE Engineering in Medicine and …, 2012
182012
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Articles 1–20