| Amino acid encoding methods for protein sequences: a comprehensive review and assessment X Jing, Q Dong, D Hong, R Lu IEEE/ACM transactions on computational biology and bioinformatics 17 (6 …, 2019 | 69 | 2019 |
| Fast and effective protein model refinement using deep graph neural networks X Jing, J Xu Nature computational science 1 (7), 462-469, 2021 | 40 | 2021 |
| Enacp: an ensemble learning model for identification of anticancer peptides R Ge, G Feng, X Jing, R Zhang, P Wang, Q Wu Frontiers in Genetics 11, 553906, 2020 | 31 | 2020 |
| Sorting protein decoys by machine-learning-to-rank X Jing, K Wang, R Lu, Q Dong Scientific reports 6 (1), 31571, 2016 | 31 | 2016 |
| Improved protein model quality assessment by integrating sequential and pairwise features using deep learning X Jing, J Xu Bioinformatics 36 (22-23), 5361-5367, 2020 | 16 | 2020 |
| MQAPRank: improved global protein model quality assessment by learning-to-rank X Jing, Q Dong BMC bioinformatics 18, 1-8, 2017 | 16 | 2017 |
| A web-based protocol for interprotein contact prediction by deep learning X Jing, H Zeng, S Wang, J Xu Protein-Protein Interaction Networks: Methods and Protocols, 67-80, 2020 | 12 | 2020 |
| Fast and effective protein model refinement by deep graph neural networks X Jing, J Xu bioRxiv, 2020.12. 10.419994, 2020 | 6 | 2020 |
| Protein inter-residue contacts prediction: methods, performances and applications X Jing, Q Dong, R Lu, Q Dong Current Bioinformatics 14 (3), 178-189, 2019 | 6 | 2019 |
| Improving protein structure prediction using templates and sequence embedding F Wu, X Jing, X Luo, J Xu Bioinformatics 39 (1), btac723, 2023 | 5 | 2023 |
| RaptorX-Single: single-sequence protein structure prediction by integrating protein language models X Jing, F Wu, X Luo, J Xu bioRxiv, 2023.04. 24.538081, 2023 | 4 | 2023 |
| RRCRank: a fusion method using rank strategy for residue-residue contact prediction X Jing, Q Dong, R Lu BMC bioinformatics 18, 1-12, 2017 | 2 | 2017 |
| Protein model quality assessment by learning-to-rank X Jing, Q Dong, X Liu, B Liu 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015 | 2 | 2015 |
| Single-sequence protein structure prediction by integrating protein language models X Jing, F Wu, X Luo, J Xu Proceedings of the National Academy of Sciences 121 (13), e2308788121, 2024 | 1 | 2024 |
| HybAVPnet: a novel hybrid network architecture for antiviral peptides identification R Ge, Y Xia, M Jiang, G Jia, X Jing, Y Li, Y Cai bioRxiv, 2022.06. 10.495721, 2022 | 1 | 2022 |
| HybAVPnet: a Novel Hybrid Network Architecture for Antiviral Peptides Prediction R Ge, Y Xia, M Jiang, G Jia, X Jing, Y Li, Y Cai IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2024 | | 2024 |
| Biological Language Model: Theory and Application Q Dong, X Jing, A Zhou, X Hu World Scientific, 2020 | | 2020 |
| Improved protein residue-residue contacts prediction using learning-to-rank X Jing, Q Dong 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | | 2016 |
