| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 305 | 2023 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 111 | 2023 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 104 | 2022 |
| ODGI: understanding pangenome graphs A Guarracino, S Heumos, S Nahnsen, P Prins, E Garrison Bioinformatics 38 (13), 3319-3326, 2022 | 60 | 2022 |
| Type I IFNs promote cancer cell stemness by triggering the epigenetic regulator KDM1B M Musella, A Guarracino, N Manduca, C Galassi, E Ruggiero, A Potenza, ... Nature immunology 23 (9), 1379-1392, 2022 | 48 | 2022 |
| Inhibition of HECT E3 ligases as potential therapy for COVID-19 G Novelli, J Liu, M Biancolella, T Alonzi, A Novelli, JJ Patten, ... Cell Death & Disease 12 (4), 310, 2021 | 39 | 2021 |
| Recombination between heterologous human acrocentric chromosomes A Guarracino, S Buonaiuto, LG de Lima, T Potapova, A Rhie, S Koren, ... Nature 617 (7960), 335-343, 2023 | 37 | 2023 |
| Unbiased pangenome graphs E Garrison, A Guarracino Bioinformatics 39 (1), btac743, 2023 | 36 | 2023 |
| Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis MG Ferrarini, A Lal, R Rebollo, AJ Gruber, A Guarracino, IM Gonzalez, ... Communications biology 4 (1), 590, 2021 | 36 | 2021 |
| Building pangenome graphs E Garrison, A Guarracino, S Heumos, F Villani, Z Bao, L Tattini, ... bioRxiv, 2023.04. 05.535718, 2023 | 34 | 2023 |
| Optimal gap-affine alignment in O(s) space S Marco-Sola, JM Eizenga, A Guarracino, B Paten, E Garrison, M Moreto Bioinformatics 39 (2), btad074, 2023 | 29 | 2023 |
| Control of replication stress and mitosis in colorectal cancer stem cells through the interplay of PARP1, MRE11 and RAD51 G Manic, M Musella, F Corradi, A Sistigu, S Vitale, ... Cell Death & Differentiation 28 (7), 2060-2082, 2021 | 24 | 2021 |
| Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome research 33 (4), 496-510, 2023 | 17 | 2023 |
| BRIO: a web server for RNA sequence and structure motif scan A Guarracino, G Pepe, F Ballesio, M Adinolfi, M Pietrosanto, ... Nucleic acids research 49 (W1), W67-W71, 2021 | 11 | 2021 |
| The Targeting of MRE11 or RAD51 Sensitizes Colorectal Cancer Stem Cells to CHK1 Inhibition. Cancers 2021, 13, 1957 L Mattiello, S Soliman Abdel Rehim, M Musella, A Sistigu, A Guarracino, ... Cancers 13 (8), 1957, 2021 | 9 | 2021 |
| Evaluation of potential miRNA sponge effects of SARS genomes in human G Pepe, A Guarracino, F Ballesio, L Parca, G Ausiello, M Helmer-Citterich Non-coding RNA research 7 (1), 48-53, 2022 | 7 | 2022 |
| A super-pangenome of the North American wild grape species N Cochetel, A Minio, A Guarracino, JF Garcia, R Figueroa-Balderas, ... Genome Biology 24 (1), 290, 2023 | 6 | 2023 |
| Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments M Pietrosanto, M Adinolfi, A Guarracino, F Ferrè, G Ausiello, I Vitale, ... NAR genomics and bioinformatics 3 (1), lqab007, 2021 | 4 | 2021 |
| Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation JA Gustafson, SB Gibson, N Damaraju, MPG Zalusky, K Hoekzema, ... medRxiv, 2024.03. 05.24303792, 2024 | 3 | 2024 |
| Gapless assembly of complete human and plant chromosomes using only nanopore sequencing S Koren, Z Bao, A Guarracino, S Ou, S Goodwin, KM Jenike, J Lucas, ... bioRxiv, 2024.03. 15.585294, 2024 | 2 | 2024 |
