Inference and analysis of cell-cell communication using CellChat S Jin, CF Guerrero-Juarez, L Zhang, I Chang, R Ramos, CH Kuan, ... Nature communications 12 (1), 1088, 2021 | 2610 | 2021 |
Differentialequations. jl–a performant and feature-rich ecosystem for solving differential equations in julia C Rackauckas, Q Nie Journal of open research software 5 (1), 15-15, 2017 | 1364 | 2017 |
Do morphogen gradients arise by diffusion? AD Lander, Q Nie, FYM Wan Developmental cell 2 (6), 785-796, 2002 | 516 | 2002 |
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds CF Guerrero-Juarez, PH Dedhia, S Jin, R Ruiz-Vega, D Ma, Y Liu, ... Nature communications 10 (1), 650, 2019 | 399 | 2019 |
Nonlinear simulation of tumor growth V Cristini, J Lowengrub, Q Nie Journal of mathematical biology 46, 191-224, 2003 | 374 | 2003 |
Cell lineages and the logic of proliferative control AD Lander, KK Gokoffski, FYM Wan, Q Nie, AL Calof PLoS biology 7 (1), e1000015, 2009 | 348 | 2009 |
An Ovol2-Zeb1 mutual inhibitory circuit governs bidirectional and multi-step transition between epithelial and mesenchymal states T Hong, K Watanabe, CH Ta, A Villarreal-Ponce, Q Nie, X Dai PLoS computational biology 11 (11), e1004569, 2015 | 276 | 2015 |
Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo RJ White, Q Nie, AD Lander, TF Schilling PLoS biology 5 (11), e304, 2007 | 264 | 2007 |
Inferring spatial and signaling relationships between cells from single cell transcriptomic data Z Cang, Q Nie Nature communications 11 (1), 2084, 2020 | 235 | 2020 |
Formation of the BMP activity gradient in the Drosophila embryo CM Mizutani, Q Nie, FYM Wan, YT Zhang, P Vilmos, R Sousa-Neves, ... Developmental cell 8 (6), 915-924, 2005 | 196 | 2005 |
Free extracellular diffusion creates the Dpp morphogen gradient of the Drosophila wing disc S Zhou, WC Lo, JL Suhalim, MA Digman, E Gratton, Q Nie, AD Lander Current Biology 22 (8), 668-675, 2012 | 166 | 2012 |
Defining epidermal basal cell states during skin homeostasis and wound healing using single-cell transcriptomics D Haensel, S Jin, P Sun, R Cinco, M Dragan, Q Nguyen, Z Cang, Y Gong, ... Cell reports 30 (11), 3932-3947. e6, 2020 | 149 | 2020 |
Efficient semi-implicit schemes for stiff systems Q Nie, YT Zhang, R Zhao Journal of Computational Physics 214 (2), 521-537, 2006 | 146 | 2006 |
Robust spatial sensing of mating pheromone gradients by yeast cells TI Moore, CS Chou, Q Nie, NL Jeon, TM Yi PloS one 3 (12), e3865, 2008 | 141 | 2008 |
Cell lineage and communication network inference via optimization for single-cell transcriptomics S Wang, M Karikomi, AL MacLean, Q Nie Nucleic acids research 47 (11), e66-e66, 2019 | 138 | 2019 |
Feedback regulation in multistage cell lineages WC Lo, CS Chou, KK Gokoffski, FYM Wan, AD Lander, AL Calof, Q Nie Mathematical biosciences and engineering: MBE 6 (1), 59, 2009 | 134 | 2009 |
The landscape of cell–cell communication through single-cell transcriptomics AA Almet, Z Cang, S Jin, Q Nie Current opinion in systems biology 26, 12-23, 2021 | 124 | 2021 |
Inference and analysis of cell-cell communication using CellChat. Nat. Commun. 12, 1088 S Jin, CF Guerrero-Juarez, L Zhang, I Chang, R Ramos, CH Kuan, ... | 123 | 2021 |
Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells B Lee, A Villarreal-Ponce, M Fallahi, J Ovadia, P Sun, QC Yu, S Ito, ... Developmental cell 29 (1), 47-58, 2014 | 122 | 2014 |
Single cell transcriptomics of human epidermis identifies basal stem cell transition states S Wang, ML Drummond, CF Guerrero-Juarez, E Tarapore, AL MacLean, ... Nature communications 11 (1), 4239, 2020 | 121 | 2020 |