| Clades of huge phages from across Earth’s ecosystems B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ... Nature 578 (7795), 425-431, 2020 | 392 | 2020 |
| Priority effects in microbiome assembly R Debray, RA Herbert, AL Jaffe, A Crits-Christoph, ME Power, B Koskella Nature Reviews Microbiology 20 (2), 109-121, 2022 | 211 | 2022 |
| Lateral gene transfer shapes the distribution of RuBisCO among candidate phyla radiation bacteria and DPANN archaea AL Jaffe, CJ Castelle, CL Dupont, JF Banfield Molecular biology and evolution 36 (3), 435-446, 2019 | 58 | 2019 |
| The rise of diversity in metabolic platforms across the Candidate Phyla Radiation AL Jaffe, CJ Castelle, PB Matheus Carnevali, S Gribaldo, JF Banfield BMC biology 18, 1-15, 2020 | 55 | 2020 |
| Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes AL Borges, YC Lou, R Sachdeva, B Al-Shayeb, PI Penev, AL Jaffe, S Lei, ... Nature microbiology 7 (6), 918-927, 2022 | 29 | 2022 |
| Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in candidate phyla radiation bacteria AL Jaffe, AD Thomas, C He, R Keren, LE Valentin-Alvarado, P Munk, ... MBio 12 (4), 10.1128/mbio. 00521-21, 2021 | 25 | 2021 |
| Protein family content uncovers lineage relationships and bacterial pathway maintenance mechanisms in DPANN archaea CJ Castelle, R Méheust, AL Jaffe, K Seitz, X Gong, BJ Baker, JF Banfield Frontiers in Microbiology 12, 660052, 2021 | 25 | 2021 |
| Ancient origin and constrained evolution of the division and cell wall gene cluster in Bacteria D Megrian, N Taib, AL Jaffe, JF Banfield, S Gribaldo Nature Microbiology 7 (12), 2114-2127, 2022 | 24 | 2022 |
| Soil candidate phyla radiation bacteria encode components of aerobic metabolism and co-occur with nanoarchaea in the rare biosphere of rhizosphere grassland communities AM Nicolas, AL Jaffe, EE Nuccio, ME Taga, MK Firestone, JF Banfield Msystems 6 (4), 10.1128/msystems. 01205-20, 2021 | 23 | 2021 |
| Saccharibacteria harness light energy using type-1 rhodopsins that may rely on retinal sourced from microbial hosts AL Jaffe, M Konno, Y Kawasaki, C Kataoka, O Béjà, H Kandori, K Inoue, ... The ISME journal 16 (8), 2056-2059, 2022 | 13 | 2022 |
| Bipartite graph analyses reveal interdomain LGT involving ultrasmall prokaryotes and their divergent, membrane‐related proteins AL Jaffe, E Corel, JS Pathmanathan, P Lopez, E Bapteste Environmental microbiology 18 (12), 5072-5081, 2016 | 12 | 2016 |
| Phage-encoded ribosomal protein S21 expression is linked to late-stage phage replication LX Chen, AL Jaffe, AL Borges, PI Penev, TC Nelson, LA Warren, ... ISME communications 2 (1), 31, 2022 | 10 | 2022 |
| Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin AL Jaffe, C Bardot, AH Le Jeune, J Liu, J Colombet, F Perrière, H Billard, ... Microbiome 11 (1), 14, 2023 | 7 | 2023 |
| Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups R Méheust, CJ Castelle, AL Jaffe, JF Banfield BMC biology 20 (1), 154, 2022 | 5 | 2022 |
| Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in CPR bacteria AL Jaffe, C He, R Keren, LE Valentin-Alvarado, P Munk, ... bioRxiv, 2021.03. 03.433784, 2021 | 3 | 2021 |
| Habitat transition in the evolution of bacteria and archaea AL Jaffe, CJ Castelle, JF Banfield Annual Review of Microbiology 77, 193-212, 2023 | 2 | 2023 |
| Biophysical characterization of microbial rhodopsins with DSE motif M del Carmen Marín, AL Jaffe, PT West, M Konno, JF Banfield, K Inoue Biophysics and Physicobiology 20 (Supplemental), e201023, 2023 | 2 | 2023 |
| Long-Term Incubation of Lake Water Enables Genomic Sampling of Consortia Involving Planctomycetes and Candidate Phyla Radiation Bacteria AL Jaffe, M Fuster, MC Schoelmerich, LX Chen, J Colombet, H Billard, ... Msystems 7 (2), e00223-22, 2022 | 2 | 2022 |
| Combined metagenomic and isotopic analyses reveal importance of urea in the dark ocean AE Dekas, NA Gorostidi, AE Parada, BJ Kapili, AL Jaffe, K Casciotti, ... 2024 Ocean Sciences Meeting, 2024 | | 2024 |
| Abundant bacterial lineages drive potential for RuBisCO-mediated carbon fixation in the dark ocean AL Jaffe, RR Salcedo, AE Dekas 2024 Ocean Sciences Meeting, 2024 | | 2024 |
